Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGTGAATCTCATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGCTTGAGTATGCTCCAAATGGAACACTATTTGAGCATCTACACAgtgagtgacattttgatcaaaatttactaacatccacaaccatatcctcctttgattattacaggctcatagcaacctaacttcttcaaccagaagtaaa...

Basic information

species Glycine max
transcript GLYMA02G39470.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G39470.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os03g18370.1 (Oryza sativa), 5'ss of exon 6
TTTGTGAATCTCATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGCTTGAGTATGCTCCAAATGGAACACTATTTGAGCATCTACACAgtgagtgacattttgatcaaaatttactaacatccacaaccatatcctcctttgattattacaggctcatagcaacctaacttcttcaaccagaagtaaa-
||| ||||  |  |||| |||||||| ||  |  | || ||  | ||| |||||||| |||| |||||||||||||||||||| |||||| |||| ||  || ||||   || | |   |   | | |  | | ||  | ||| |||     |  |   ||||   | ||   ||| |   |      | ||| |      
TTTATGAACTTGCTTGGCTATTGTGAGGAAGAGCAACCTTTTACCAGAGTGATGGTGTTTGAATATGCTCCAAATGGAACACTTTTTGAGTATCTGCATGgtaagtgttcttgtcagttatcatgattctc-ttcatcatcatgtccagaaattgtcggtacatttttatttgaacattggtcaagatatcagcaacctca

upper sequence: GLYMA02G39470.1 (Glycine max), 5'ss of exon 10
lower sequence: LOC_Os05g39410.1 (Oryza sativa), 5'ss of exon 8
TTTGTGAATCTCATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGCTTGAGTATGCTCCAAATGGAACACTATTTGAGCATCTACACAgtgagtgacattttgatcaaaatttactaacatccacaaccatatcc-tcctttgattattacaggctcatagcaacc--taacttcttcaaccagaagtaaa
||  |||| ||  | || || ||||||||  |  | |||||| |  | ||||||||| ||||||||| | ||||||||||||| ||||| ||  | ||  || ||  |  ||   ||  |  |||  ||   | | || | | |||  ||     || |  |     ||||    |||  |||    ||      | ||    
TTAATGAACCTTGTGGGTTACTGTGAAGATGAAGAACCATTCACTCGGATGATGGTGTTTGAGTATGTTTCAAATGGAACACTGTTTGAACACTTGCATGgtaagaaaacttcacatttag-tttgttattcttcgcaccaagatcagtcacgctatcagcagctattcatgatcaccattaaaacattgttgttgcag----

upper sequence: GLYMA02G39470.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G095588_T01 (Zea mays), 5'ss of exon 7
TTTGTGAATCTCATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGCTTGAGTATGCTCCAAATGGAACACTATTTGAGCATCTACACAgtgagtgacattttgatcaaaatttactaacatccacaaccatatcctcctttgattattacaggctcatagcaacctaact-tcttcaaccagaagtaaa----------------------------------------------------------------------------------------------
 || |||| ||  | || |||||||||||  | || ||||||    | ||||||||| | ||||||||| |||||||| ||||||||||||   | ||  ||||||     ||| ||      || |     |   ||    |||  |   | |  || | ||       |  | |||   | |||   |  || |||                                                                                                 
CTTTTGAACCTTGTGGGTTATTGTGAAGACGAAAAACCATTCATTCGGATGATGGTGTTCGAGTATGCTTCAAATGGATCACTATTTGAGCGCTTGCATGgtgagt-----tttaattgtgggttgcctttcttttcaggggtatgttg--tggggtactgcaaagctgcaaaagccttgttatctgttattagcagtcttcacacaagggctcatgatgttagcagttgtgacaggaaaattcatataagcaggtttacaaattctaattatcatcaaaacattgttgttgcag

upper sequence: GLYMA02G39470.1 (Glycine max), 5'ss of exon 10
lower sequence: GRMZM2G135359_T04 (Zea mays), 5'ss of exon 5
TTTGTGAATCTCATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGCTTGAGTATGCTCCAAATGGAACACTATTTGAGCATCTACACAgtgagtgacattttgatcaaaatttactaa----catccacaaccatatcctcctttgattattacaggctcatagcaacctaacttcttcaaccagaagtaaa-------------------------------
||| ||||  |  |||| || ||||| ||  |  | || ||  | ||| |||||||  |||| |||||||||||||| ||||| ||||||||||| ||  || || | | ||    |||  | || || |    ||||    || | | |     || |   |   ||  |  || ||   | |||||| ||      |  |||                               
TTTATGAACTTGCTTGGCTACTGTGAGGAAGAGCATCCCTTTACCAGAGTGATGGTATTTGAATATGCTCCAAATGGGACACTTTTTGAGCATCTCCATGgtaagcg-cgttgctgtcatgagtttctcagtttcatctgtcacaaaaactgttcttcagcgt-gtagagttttatcactatgacttctgcattgttgatcaaagtttggcaatgccttcctgatttcaccgcag

upper sequence: GLYMA02G39470.1 (Glycine max), 5'ss of exon 10
lower sequence: Vv06s0004g07030.t01 (Vitis vinifera), 5'ss of exon 8
TTTGTGAATCTCATTGGGTATTGTGAAGAGAATAAGCCATTCTCAAGAATGATGGTGCTTGAGTATGCTCCAAATGGAACACTATTTGAGCATCTACACAgtgagtgac--attttgatcaaaatttactaacatccacaaccatatcctcctttgattattacaggctcatagcaacctaacttcttcaac--cagaagtaaa-
|||||||| || ||||||| |||||||||| ||||||| ||  | |||||||||||  |||| |||||||| || ||||| || ||||||||||| ||||||||||  |    |||  |||| || |||   ||| ||    |||||  | |   ||  | ||    ||      |   || | |  || |   || ||   || 
TTTGTGAACCTTATTGGGTTTTGTGAAGAGGATAAGCCTTTTACGAGAATGATGGTTTTTGAATATGCTCCTAACGGAACGCTCTTTGAGCATCTGCACAgtgagtatctagctttcctcaatatatacagccatgcag---catatttttcaagga--aatatgtacttcatttagtatatcatgatctattgcacaaaccaac