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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaattatatctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatgatattgaatcttatatgcttgaatttgtacag

Basic information

species Glycine max
transcript GLYMA02G38160.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g52840.2 (Oryza sativa), 5'ss of exon 8
TTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaattatat---ctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatgatattgaatcttatatgcttgaatttgtacag
 ||||||||||||| || |||||||||||||| || || ||||| ||||| ||||| ||||| || |||||||| ||||  ||  | || ||||| |||| ||       |||  | |   |   | || |   | |  ||    |||||||     ||| |  |  |  |||||   ||| || |   
ATGGAGAAAAGTGCCGTTCTTTTTAGGCCAAAGTTGATCGTTGCGGGTGCAAGTGCATATGCGCGTCTTTATGACTATGACCGCATGCGGAAGgtgaattttactgctcaatagtgcatgctgaatcttcaccttctgtaa----tcagtca----aataattcacttgttatgc---aatctgcag--

upper sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G135283_T03 (Zea mays), 5'ss of exon 8
TTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaattatatctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatgatattgaatctta-tatgcttgaatttgtacag-----------------------------------------------------
||||||||||| || || |||||||||||||| || ||  |||||||||| ||||| |||||||| || ||||||||||  ||| | || |||| ||  | | | |     | |   ||   | |  ||  |  |    |  |    ||| || |||||  |    | ||| |   |  ||| || |                                                     
TTGGAGAAAAGCGCTGTTCTTTTTAGGCCAAAGTTGATCATTGCTGGTGCAAGTGCATATGCTCGGCTATATGATTATGACCGTATGCGGAAGgcaaggtttctttccacgatagtattttttctccaagatgcaagggagctgca-cattattatattacagagaactatacagaacattgaaccgcgatctttttttttttatcaatcaaataattccataatgttatgtgtcgacag

upper sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 8
lower sequence: AT5G26780.3 (Arabidopsis thaliana), 5'ss of exon 8
TTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaattatatctgatacagaaacttaggtatttaatgtttagaacaattcagtcatgatgatattgaatcttatatgcttgaatttgtacag
 | || || ||||| || ||||| || || ||| | || ||||| ||||| |||||||||||||| || ||||| ||||||||| |||| |||||||| |||      |     ||||   |  | | | ||||||     | ||    |     | || ||  ||||       || ||| |   
CTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGgtaaagtat------tgtctcaactcttgagtgtgaagtttagt----tacaaaagttgcagttttcaaggttatgcataaaaaattgcag--

upper sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g07960.t01 (Vitis vinifera), 5'ss of exon 8
TTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaattatatctgatacagaaac----ttaggtatttaatgtttagaacaattcagtc----atgatgatattgaatcttatatgctt-gaatttgtacag------------------------
|||||||||||||| |  || || || |||||| |||| |||||||| || ||||| ||||| || |||||||||||||||||| | ||||||||||   || |  | |  ||  ||     |  ||   | ||  | | |||| |  |||     || || || || ||   || ||| || ||| | ||  |                         
TTGGAGAAAAGTGCTGCCCTCTTCAGACCAAAACTAATTGTTGCTGGCGCAAGTGCCTATGCACGTCTTTATGATTATGCACGTATCCGCAAGgtaagagattttggtttgagggacactactgcgttcatcatagtcacaacattaaagttctctattattattttaaagtctaaatgtttagaaatcgtgtaactttaaattcttaggatttaacag

upper sequence: GLYMA02G38160.2 (Glycine max), 5'ss of exon 8
lower sequence: PP1S79_54V6.1 (Physcomitrella patens), 5'ss of exon 8
TTGGAGAAAAGTGCAGTACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaatt-atatctgataca-gaaacttaggtatttaatgt--ttagaacaattcagtcatgatgatattgaatcttatatgcttgaatttgtacag------------------------------------------------------
 |||||||||| ||||| ||||  ||||||||||| ||||| |||||||| ||||| |||||||||| ||| || ||||| ||| | ||||||||   || | || ||||    |   | |  | |||   ||   ||  | || ||   |  |  |    |  ||| |||  |    ||   | ||| |                                                      
ATGGAGAAAAGCGCAGTTCTTTACAGGCCAAAATTGATAGTAGCTGGTGCCAGTGCCTATGCTCGCCATTACGACTATGCTCGTATGCGCAAGgtgtgtttaaatttgatgtttgcggcctttgcattatgtgaaattgcatcatttgtatgtttctacagtgtaatgttaactatccgatactctactgtgtacctgctccttcgagttcatatgtgatctgcaaattgtctttctcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5819930|gb|AI988197.1|AI988197
EST:     CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAG                         GTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
genomic: CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaattata ... atttgtacagGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
EST: gi|16279502|gb|BI943469.1|BI943469
EST:     CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAG                         GTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT
genomic: CTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGgtaaattata ... atttgtacagGTCTGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGT