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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATTTGGACCATCAAAGCGGCTTCCAGATATTCTTGCAGCCTCAAGTTCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaatttccccccctctttcccatctattagactactttattgttctactcaactcaagttaatatgtcatgtaaatttaggttgctgtggatt...

Basic information

species Glycine max
transcript GLYMA02G36960.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338422|gb|CO982288.1|CO982288
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGCAG                       
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCC-A--AGgtatttaaaa ... acttcagc
EST: gi|58025341|gb|CX712082.1|CX712082
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         TAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCA
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcagTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCA
EST: gi|57575838|gb|CX548809.1|CX548809
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         TAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCTTGATGCTGTGCA
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcagTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCA
EST: gi|207833730|gb|GD807171.1|GD807171
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         C
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcag-
EST: gi|207833730|gb|GD807171.1|GD807171
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         C
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcag-
EST: gi|207833730|gb|GD807171.1|GD807171
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         C
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcag-
EST: gi|207833730|gb|GD807171.1|GD807171
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         C
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcag-
EST: gi|192295491|gb|FG987105.1|FG987105
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         TAGCA-GAGAATCAAGTGGTTTTTCTTGGATCAATAATTCCTGATGCTGTG
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcagTAGCAAGAGA-TCAAGTGGTTTT-CTTGGATCAATAATTCCTGATGCTGTG
EST: gi|58021429|gb|CX708170.1|CX708170
EST:     TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAG                         TAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCA
genomic: TCTTCTGGTTCTATTCATCTTTTCACTCTTGGATTTGCTTCACGTCCAAGgtatttaaaa ... acttcagcagTAGCAAGAGATCAAGTGGTTTTCTTGGATCAATAATTCCTGATGCTGTGCA