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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTGACTTGGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGgtaattataaactaaaattctattacatcaactttttttaagaccatatatcaatatttgcttgtgagaaacacaaaagggcccaatattttagtcagca...

Basic information

species Glycine max
transcript GLYMA02G36530.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G36530.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv11s0037g00180.t01 (Vitis vinifera), 5'ss of exon 8
ATTATTGACTTGGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGgtaattata-aactaaaattcta----ttacatcaactttttttaagaccatatatcaat---atttg----cttgtgagaaacacaaaagggcccaatattttagtcagca
||| ||||  | ||||| || |||||||| ||||| ||||||||||| ||||||||||| ||||  || | ||  |   |   |    |      |      | ||| |  |||     ||   |||||     |||| || ||    || ||  | || |||          
ATTGTTGATCTAGCAACATTAACTGGGGCCTGTGTAGTTGCTCTTGGGCCCTCAATTGCAGgtatgtacataatcatggtgacaaatttggtggtagaaaactgtaaaattataggaagatttaatttgatgatttgtcagcaatgttaaggg--ctaagatt----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254338404|gb|GR845654.1|GR845654
EST:     GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTG                         GTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
genomic: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
EST: gi|151406149|gb|EV275964.1|EV275964
EST:     GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTG                         GTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
genomic: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
EST: gi|192304831|gb|FG997041.1|FG997041
EST:     GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTG                         GTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
genomic: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
EST: gi|21677539|gb|BQ629890.1|BQ629890
EST:     GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTTGTCCCTCAATTGCTG                         GTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG
genomic: GGCAACCTTGACTGGGGCTTGTGTTGTTGCTCTTGGACCCTCAATTGCTGgtaattataa ... gtttttgaagGTGTGTTTACACCCTGTGATGACCTAGCAAAGGAAGTTTTTGAAGCTTCTG