Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGgtaagattatttgttccttgtgttttgcttgttaccattgactcaaatcttaactgaaattgatgtgttggaattttgtttgccgggaatgcag

Basic information

species Glycine max
transcript GLYMA02G35500.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G35500.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g47580.2 (Oryza sativa), 5'ss of exon 7
------------------------------------------------GTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGgtaagattatttgttccttgtgttttgcttgttaccattgactcaaatcttaactgaaattgatgtgttggaattttgtttgccgggaatgcag
                                                ||||| || |||||||||||||| || || || ||||| |||||||| |||||||||   || ||||     |||| ||||| ||    ||   | || |  |  ||| || |  |    |  ||    |||  |  |   |||||
AGACATCCTGCTTTTACCTGTTGGTGCTTACAGACTTTATCTTTTCAGGTGAACGTTAGTGAACTTGGTCTGGTAACCCCTGCTGGAAAAGTTGTTTGGGgtaaggc-atctgttga--atgttctgcttattttgctt--tttaacttctccctggaacttgttccataaaacagcgtt--cttgtcgtgcag

upper sequence: GLYMA02G35500.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g47580.1 (Oryza sativa), 5'ss of exon 8
GTGAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGgtaagattatttgttccttgtgttttgcttgttaccattgactcaaatcttaactgaaattgatgtgttggaattttgtttgccgggaatgcag
||||| || |||||||||||||| || || || ||||| |||||||| |||||||||   || ||||     |||| ||||| ||    ||   | || |  |  ||| || |  |    |  ||    |||  |  |   |||||
GTGAACGTTAGTGAACTTGGTCTGGTAACCCCTGCTGGAAAAGTTGTTTGGGgtaaggc-atctgttga--atgttctgcttattttgctt--tttaacttctccctggaacttgttccataaaacagcgtt--cttgtcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192313831|gb|FK007647.1|FK007647
EST:     GAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAG-TCACAAATAACCCAGAAA-CGATGGTTGTATA
genomic: GAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGgtaagattat ... gggaatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATA
EST: gi|208031232|gb|GD829816.1|GD829816
EST:     CGGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGATTGTATAAATG
genomic: CGGCTGGGAAAGTTGTGTGGGgtaagattat ... gggaatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
EST: gi|193526130|gb|FK480655.1|FK480655
EST:     CGGCTGGGAAAGTCGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAACGA
genomic: CGGCTGGGAAAGTTGTGTGGGgtaagattat ... gggaatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGA
EST: gi|31310190|gb|CD395393.1|CD395393
EST:     GAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGgtaagattat ... gggaatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
EST: gi|193598354|gb|FK553288.1|FK553288
EST:     CGGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
genomic: CGGCTGGGAAAGTTGTGTGGGgtaagattat ... gggaatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
EST: gi|193590509|gb|FK544987.1|FK544987
EST:     GCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
genomic: GCTGGGAAAGTTGTGTGGGgtaagattat ... gggaatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
EST: gi|31312274|gb|CD397477.1|CD397477
EST:     GAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGgtaagattat ... gggaatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
EST: gi|20811431|gb|BQ295909.1|BQ295909
EST:     GAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGgtaagattat ... gggaatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
EST: gi|16348558|gb|BI974153.1|BI974153
EST:     GAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
genomic: GAATGTCAGTGAACTTGGTCTTGTCACGCCGGCTGGGAAAGTTGTGTGGGgtaagattat ... gggaatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
EST: gi|208187025|gb|GD985097.1|GD985097
EST:     CGGCTGGGAAAGTTGTGTGGG                         GTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG
genomic: CGGCTGGGAAAGTTGTGTGGGgtaagattat ... gggaatgcagGTAAATACGCTCAGGTCACAAATAACCCAGAAAACGATGGTTGTATAAATG