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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGgttttcatttcatcatctacaagtctttttatttcagattttaagtctgctccttcatttgcactgctttatgattattatttcccttctgccactattctactacctctaaccaactgtttaatctatcattttgatgtgcag

Basic information

species Glycine max
transcript GLYMA02G25240.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 8
GGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGgttttc-atttcatcatcta-caagtctttttatttcagattttaagtctgctccttcatttgcactgctttatgattattatttcccttctgccactattctactacctctaaccaactgtttaatctatcattttgatgtgcag
||| ||  | |||||  ||||| | |||||||||||||| ||||||||||||||  |||||||||| || || ||  | ||||  || |||||||||||||  ||||||  |     |||   | ||   ||||     |       ||  ||  |||    || | |  |||   ||  |   || ||  |  ||                                              
GGTGGTACGGATACGGCGAATGAGAGAAGTAAATCAGGAGGCAGTTCTTCTTGCGTTGTGCTCCAAGACCTTCACAGCAAAAGCGATTATCTTCAGgttttttatttcaatacaagtcaaagttattagcttcatgaagtggtgaaactttttggtttttg-tgttatgggatatgtaaatttattttgaaag-atga--------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10255668|gb|BE823434.1|BE823434
EST:     CTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAG                         TGGAACAAAGCAAGCTGCACATAGATTGAAGATTATATTTGGATTAGCTGG
genomic: CTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGgttttcattt ... tgatgtgcagTGGAACAAAGCAAGCTGCACATAGATTGAAGATTATATTTGGATTAGCTGG
EST: gi|254340268|gb|GR858393.1|GR858393
EST:     CTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAG                         TGGAACAAAGCAAGCTGCACATAGATTGAAGATTATATTTGGATTAGCTGG
genomic: CTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGgttttcattt ... tgatgtgcagTGGAACAAAGCAAGCTGCACATAGATTGAAGATTATATTTGGATTAGCTGG