1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTTCCAGACCGGGTTTTTATGAAATTAGTAGTCTGTGCAAAAACAAATGAAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagagtttttacagctgctctatattgttttgataatgatacatgagttttcaattcacttgatatacatttgcttgatacccag
species | Glycine max |
transcript | GLYMA02G16010.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCEST: gi|192311298|gb|FK003769.1|FK003769
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCEST: gi|10237572|gb|BE806460.1|BE806460
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: AAGTTCTAGGTTTGCATATGTGTGNAGAAGATGCTCCTGAAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGAACCAAG-CTGACTTTGATGCEST: gi|192314162|gb|FK011534.1|FK011534
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGA-CCAAGGCTGACTTTGATGC
EST: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCEST: gi|192314161|gb|FK011533.1|FK011533
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: AAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCEST: gi|14258668|gb|BG881576.1|BG881576
genomic: AAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCEST: gi|7924612|gb|AW830638.1|AW830638
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGANATTGTGCAG GGGTTTGCAGTTGCTCTTAEST: gi|193526955|gb|FK483305.1|FK483305
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTA
EST: AAGTTCTAGGTTTGCATATGTGTGGGGAAGATGCTCCTGAAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCEST: gi|16997020|gb|BM086392.1|BM086392
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCEST: gi|6134950|gb|AW133343.1|AW133343
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCEST: gi|7286200|gb|AW598687.1|AW598687
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCEST: gi|8283020|gb|BE020581.1|BE020581
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: AAGTTCTAGGTTTGCATATGTGTGGAGACGATGCTCCTGAAATTGTGCAN GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCCEST: gi|7286174|gb|AW598661.1|AW598661
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
EST: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAG GGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
genomic: AAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagag ... tgatacccagGGGTTTGCAGTTGCTCTTAAAGCTCGCTTGACCAAGGCTGACTTTGATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCCAGACCGGGTTTTTATGAAATTAGTAGTCTGTGCAAAAACAAATGAAGTTCTAGGTTTGCATATGTGTGGAGAAGATGCTCCTGAAATTGTGCAGgtttttagagtttttacagctgctctatattgttttgataatgatacatgagttttcaattcacttgatatacatttgcttgatacccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG