Sequence
atgc intronic sequence ATGC exonic sequenceTTGAAGCATTGGCTTTTGGGAGCACAGCCATGTGTGGAAGAAATACTTTCTGGTGGTGGTTAATATCTGCAATTACATTTTATGGTGCAACCTGGGAGCAgtaagttatcatgttcattaacatatgataaatatgttatattatattgttttcttttgtttccttaaaatatttttttaagtttttattagaaagtcac...
Basic information
species | Glycine max |
transcript | GLYMA02G14210.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G25585.3 (Arabidopsis thaliana), 5'ss of exon 5
TTGAAGCATTGGCTTTTGGGAGCACAGCCATGTGTGGAAGAAATACTTTCTGGTGGTGGTTAATATCTGCAATTACATTTTATGGTGCAACCTGGGAGCAgtaagttatcatgttcattaacatatgataaatatgttatattatattgttttcttttgtttccttaaaatatttttttaagtttttattagaaagtcac
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TAGAAACAATGGCATATGGGAGTACTGCTATGTGTGGAAGAGATACTTTCTGGTTTTGGGTTATTTCTGCTGTTCCATTTTTTGGAGCAACATGGGAACAgtaagcgtttttatactttgtttaactctgtttcatcgatacaaaattctaatactttgctttcatgc--tcttcttttgtgtttag-------------
upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 7
TTGAAGCATTGGCTTTTGGGAGCACAGCCATGTGTGGAAGAAATACTTTCTGGTGGTGGTTAATATCTGCAATTACATTTTATGGTGCAACCTGGGAGCAgtaagttatcatgttcattaacatatgataaatatgttatattatattgttttcttttgtttccttaaaatatttttttaagtttttattagaaagtcac
||||||| |||| ||||| ||||| || |||||||||||| |||||||||||| ||| | || || || ||| |||||||||| || || ||||| |||||||| | || |||| | || | | || || || || | ||| || | | | ||| | ||
TTGAAGCCATGGCATTTGGAAGCACTGCAATGTGTGGAAGAGATACTTTCTGGTTCTGGGTTATTTCAGCTATTCCATTTTATGGAGCTACATGGGAACAgtaagt-actgcttttatta-cctaaaacatccataa-atgttttagcgattttcttatacttttctttacctttctctag-------------------
upper sequence: GLYMA02G14210.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0010g00950.t01 (Vitis vinifera), 5'ss of exon 8
TTGAAGCATTGGCTTTTGGGAGCACAGCCATGTGTGGAAGAAATACTTTCTGGTGGTGGTTAATATCTGCAATTACATTTTATGGTGCAACCTGGGAGCAgtaagttatcatgttcattaacatatgataaatatgt-tatattatattgttttcttttgtttccttaaaatatttttttaagtttttattagaaagtcac
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TTGAAACCATGGCTTTTGGGAGCACTGCTATGTGTGGAAGAACTTCTTTCTGGTTCTGGGTAATTTCAGCTGTTCCATTTTATTGTGCAACATGGGAACAgtaagtggtt-caaatagtagtagctcattactttatatattatttatagcacagttttgtacacttggaatacaacattattagccattttgatttttttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208141850|gb|GD940462.1|GD940462EST: TGGTGGTGGTTAATATCTGCAATTACA-TTTATGGTGCAACCTGGGAGCA CTATTTCACCAATACACTTATACTGCCTGTTATAAATGGGCCTACAGAGGG
genomic: TGGTGGTGGTTAATATCTGCAATTACATTTTATGGTGCAACCTGGGAGCAgtaagttatc ... ttggatgcagCTATTTCACCAATACACTTATACTGCCTGTTATAAATGGGCCTACAGAGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGAAGCATTGGCTTTTGGGAGCACAGCCATGTGTGGAAGAAATACTTTCTGGTGGTGGTTAATATCTGCAATTACATTTTATGGTGCAACCTGGGAGCAgtaagttatcatgttcattaacatatgataaatatgttatattatattgttttcttttgtttccttaaaatatttttttaagtttttattagaaagtcac
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA