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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGCATCTGAACTTGATGAATTATCTGGTCCTGAAAAAGAACCAGCTAGAGAGTTTTTGGTTCTGCAAGGCGTGCGTTTCGCTTTCCGTGTCCATCAGgtaatgctaggacacttgtttcatatgcttctgcatccctttgaggtcattaggcactgattttgcttaggtaaactcagtgacggatagaaaaacctta...

Basic information

species Glycine max
transcript GLYMA02G11260.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G11260.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 8
TGTTGCATCTGAACTTGATGAATTATCTGGTCCTGAAAAAGAACCAGCTAGAGAGTTTTTGGTTCTGCAAGGCGTGCGTTTCGCTTTCCGTGTCCATCAGgtaa----tgctaggacacttgtttca-------tatgcttctgcatccctttgaggtcattaggca-----ctgattttgcttaggtaaactcagtgacggatagaaaaacctta----------------------------------------------------------------------------------
|||  |||| || ||||||| | |   ||| || || || ||||||    ||||||||||| ||||||||||||||||||| ||||||||||| |||||||||      | |    ||  ||||||        ||| ||||  |||    |   | | |     ||       ||  |   |||  |   ||||     |||   | ||| | ||                                                                                  
TGTATCATCAGAGCTTGATGCACTGAGTGGACCAGAGAAGGAACCAAACCGAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAGgtatgtttcgtttctgcatctgtttctgttaatttatacttc-acatgttctacggtttacagaacaaatgatagaagtattttattttccctcaaattgggaagaacaaaacgtaaaatttgtagcaatgtgaataacaagaagttgaaaattgtgacaagtatggaaacaacattctgaattggacttgttcccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10844840|gb|BF068041.1|BF068041
EST:     GAGAGTTTTTGGTTCTGCAAGGCGTGCGTTTCGCTTTCCGTGTCCATCAG                         TTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGACCTAAGG
genomic: GAGAGTTTTTGGTTCTGCAAGGCGTGCGTTTCGCTTTCCGTGTCCATCAGgtaatgctag ... ctctcttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGACCTAAGG