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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATATAAAACTTTCATGgtaaaattctaaaattggctgcaaattctaacttctttggcacctacacttgatattaatttatagcatctgcttatatgaaccag

Basic information

species Glycine max
transcript GLYMA02G06340.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06340.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g01790.t01 (Vitis vinifera), 5'ss of exon 9
GTGGCTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATATAAAACTTTCATGgtaaaattctaaaattggctgcaaattcta-acttctttggcacctacacttgatattaatttatagcatctgcttatatgaaccag------------------------------------------------------------
||     |||  ||||| ||  | ||| |||||||  |||||||||| |||||||| || ||||| ||||||||||||| |   | ||  |   |  || ||    ||    ||   || |  |   || ||   |||||   || ||  || |||||  ||                                                            
GTACTACTGGAGGATGGGACACAGGTGTATTCTTCTGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATGgtaagaagttcaatgttattaaaactttgggacgatattaatacattaaaaagagat-gttttatgatatatg--taaatgaaaaaggaaaatgcagatgagttatgacgatttttttaatcaaaagctatgatttttctgattcag

upper sequence: GLYMA02G06340.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g01780.t01 (Vitis vinifera), 5'ss of exon 9
GTGGCTTTGGCTGATGGTACTGAAGTGCATTCTTCAATTGTTTTGTCTAATGCAACTCCATATAAAACTTTCATGgtaaaattctaaaattggctgcaaattctaacttctttggcacctacacttgatattaatttatagcatc--tgcttatatgaaccag------------------------------------------------
||     |||||||||| ||    |||||||||||| |||||||||| |||||||| || ||||| ||||||||||||||  |   ||      |      |  |         |||   | |  |  |||||    |    | |  || |  | | || |                                                  
GTATTGCTGGCTGATGGGACACGGGTGCATTCTTCAGTTGTTTTGTCAAATGCAACCCCTTATAAGACTTTCATGgtaaaccttagaagaaccttttttggttgactgggagaagcatggataaatattattataccaagaaaccaatgatcttctcaaactattgtatttggattttgattttgatcattgttatgatttcctgatacag