Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattgatttaggctataactttctgataaagcgaagttattattttataagtagtgctgtgaatgatgttcatattgctgtgacttcaatcag

Basic information

species Glycine max
transcript GLYMA02G05680.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05680.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
GTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattgatttaggctataactttctgataaagcgaagtta--ttattttataagtagtgctgt--gaat-gatgttcatattgctgtgacttcaat-cag
|||  || |||| ||||| ||||||||| | ||||| ||||||||||||||||| |||||||||||||||||||||    |   | | || |       |  | | | || |   ||| || |   || |||| |  |||| |||  | | ||||   |||  |   | |||
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag

upper sequence: GLYMA02G05680.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G36210.2 (Arabidopsis thaliana), 5'ss of exon 7
GTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattgatttaggctataactttctgataaagcgaagttattattttataagtagtgctgtgaatgatgttcatattgctgtgacttcaatcag
|||  ||||||| ||||||||| ||||||| ||    |||||||| || ||||| ||||||||||||||||||||||| |||      || ||   | | |    || || |  || | | || || |    | | ||  ||    |||    |  || ||     
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatccta-ctaaataacatgttgatgtaaaaatgtca-aattactaagattattgtggtattgattatgatttctccag----

upper sequence: GLYMA02G05680.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
GTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattgatttagg--ctataact--ttctgataaagcgaagttattattttataagtagtgctgtgaatgatgttcatattgctgtgacttcaatcag
|||||| || || ||||||||  |||||||||||||||| ||||||||||| |||||||||||||| ||||||||||  ||| |     ||| ||  | ||| | |     | ||| | || |   |  | |  |||   |||| |||| ||| | |||| ||    |||
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataattactgttatggcatcatt--tgtttgtgatcttcagatttccgtgaattgctgcag

upper sequence: GLYMA02G05680.1 (Glycine max), 5'ss of exon 8
lower sequence: PP1S395_50V6.1 (Physcomitrella patens), 5'ss of exon 9
GTATGCGCTGCAGTGGGAGTCCGAGAATCTGATTGCTGTGAGCACTGCAATTCAAGATTGGCTTACTTCAAgtaattga---tttaggctat-aactttctgataaagcga-agttattatttta---taagtagtgctgtgaatgat---gttcatattgctgtgacttcaatcag
 |||||| |||  |||||| | ||| || | || || || ||| | |||||||||||||||||||||||||||     |   |||    | |  |  |  || ||| || | | |  || ||||    | | |    |||   |||||   |  | |  |   || | |||      
ATATGCGTTGCTTTGGGAGACGGAGCATGTCATCGCAGTTAGCTCCGCAATTCAAGATTGGCTTACTTCAAgtgtgccacgctttcccttgttgatatgatgttaaggcaacaatctttgttttgatttgaattagcctgcagatgatcacgcacctgctcaagttatttc------