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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGCGCATCCCAAACTAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTCTTGGAACTGTCATACGCAAACTGAGgttagcttataaagtttgcatttcaatatttatttttactcaattaaatgcacaccgtttcgatatccttttcgccttacccagaactttaacccacatg...

Basic information

species Glycine max
transcript GLYMA02G05650.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05650.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G51150.1 (Arabidopsis thaliana), 5'ss of exon 10
AGCGCGCATCCCAAACTAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTCTTGGAACTGTCATACGCAAACTGAGgttagcttataaagtttgcatttcaatatttatttttactcaattaaatgcacaccgtttcgatatccttttcgccttacccagaact--ttaacccacatg
| || ||||| ||| |    |||||||| || ||||||||||| ||| | || ||||| || ||||||||||| || ||||||||||| || || || |||||||| | | |  | |     |||||     | | |  ||  |   |       |   ||  ||| |||| | |  ||  || |  |  |||| |  |   
AACGTGCATCTCAATCATTATCAGCTGGCACAAGGTTGAAAGAAGGTGGTCATATAAACCGAAGTTTACTAACACTAGGAACTGTCATTCGAAAGCTAAGgttagcctgtgacctata-gcgtcaatgaaattctgtgatctgtgccaccttaggctgctctttattctttcc-ctatattcaaagatggttaagcagctaa

upper sequence: GLYMA02G05650.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g03060.t01 (Vitis vinifera), 5'ss of exon 8
AGCGCGCATCCCAAACTAATTCAGCTGGTACGAGGTTGAAAGAGGGTTGCCACATAAATCGTAGTTTACTAACTCTTGGAACTGTCATACGCAAACTGAGgttagcttataaagtttgcatttcaatatttatttttactcaattaaatgcacaccgtttcga--tatccttttcgccttacccagaactttaacccacatg------
|||| ||||| ||  |    |||||||| || ||| ||||||| |||||||||||||| || |||||| |||| || |||||||| || || || || ||||||| || ||         ||| | | ||| ||||||   | ||   | ||    ||||  |  ||  | | | |   | ||| ||   | |  |||  |       
AGCGTGCATCTCAGTCATTATCAGCTGGCACAAGGCTGAAAGAAGGTTGCCACATAAACCGCAGTTTATTAACCCTGGGAACTGTTATCCGTAAGCTAAGgttagattttat--------ttttattctttttttttatatattttttttcattttgtttacaagtaagcatctggttgttccccgagaatcagtccatgtattcatg