Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGTTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAGgtaaatgtagtgaagttgagatattttacatgctagttacctagaattgatttcatgaattgatcattttcgtttatacaaacaagttaacacatctggggacctcctttcttttcccagcatgttgcctattttatgtagtgattatgaaattgatttgttctcag

Basic information

species Glycine max
transcript GLYMA02G04920.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G04920.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G11980.1 (Arabidopsis thaliana), 5'ss of exon 9
AGCTGTTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAGgtaaatgtagtgaagttgagatattttacatgctagttacctagaattgatttcatgaattgatcattttcgtttatacaaacaagttaacacatctggggacctcctttcttttcccagcatgttgcctattttatgtagtgattatgaaattgatttgttctcag
 || ||||| |||||||||||||| || |||||||  ||||| || |||||||||||  |     |||| ||  | |   |  ||||  | | | ||  ||  |  ||    |    || ||   | | |   || ||   | ||  | || |      |   |||                                                        
GGCGGTTCTAAACTTATTCTCCAAGAACATGAGTACAGCAGTTGAGAATTTTCAGgtgcaatatttgaacttttgtt--ctggcatggaactcaactcaaacagtgtttggtatccaattatccacatgt---cacactcttgaattcttcagaatgttttacttccag-----------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254341548|gb|GR852685.1|GR852685
EST:     TTCTCAACTTATTCTCCAAAAATATGAGTACTGCAGTAGAGAATTTTCAG                         TTGGTCTTGGATTCACATCGATGGGTTCCCCTGCCCGGAGTTGGCTTTTCT
genomic: TTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAGgtaaatgtag ... ttgttctcagTTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCT
EST: gi|208211795|gb|GE010420.1|GE010420
EST:     TTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAG                         TTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCT
genomic: TTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAGgtaaatgtag ... ttgttctcagTTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCT
EST: gi|151410266|gb|EV280081.1|EV280081
EST:     TTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAG                         TTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCT
genomic: TTCTCAACTTATTCTCCAAAAATATGAGTAGTGCAGTAGAAAATTTTCAGgtaaatgtag ... ttgttctcagTTGGTCTTGGATTCACATCGATGGGTTCCCCTTCCCGGAGTTGGCTTTTCT