1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTTGCAATTCTGCTATCAAGAAAATTTAGCCTTGCTTGGAGATGAGGTTTACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgttgtgctgcagcgctggtaaactgatattttgcctcagttgttaatgtgaactaataatatatacttttctacacgagaag
species | Glycine max |
transcript | GLYMA02G04320.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|15204829|gb|BI427597.1|BI427597
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|17518503|gb|BM187545.1|BM187545
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTEST: gi|13125648|gb|BG316218.1|BG316218
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|23064228|gb|BU579001.1|BU579001
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: TGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|20498019|gb|BQ272949.1|BQ272949
genomic: TGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|14999822|gb|BI320636.1|BI320636
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCCCCCATAAACAAGGAAGTTCAGCTTATTTCTEST: gi|23064069|gb|BU578842.1|BU578842
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: AGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|22525213|gb|BU084024.1|BU084024
genomic: AGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTEST: gi|120534088|gb|EH262221.1|EH262221
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|22522320|gb|BU081131.1|BU081131
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTEST: gi|120529217|gb|EH257351.1|EH257351
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|31561742|gb|CD487580.1|CD487580
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|10844815|gb|BF068017.1|BF068017
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|20813120|gb|BQ297598.1|BQ297598
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTEST: gi|13482372|gb|BG511715.1|BG511715
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|120530295|gb|EH258429.1|EH258429
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|22525567|gb|BU084378.1|BU084378
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTEST: gi|13481734|gb|BG511077.1|BG511077
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAA-TGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|37996526|gb|CF808115.1|CF808115
genomic: ACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|23064220|gb|BU578993.1|BU578993
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|13481252|gb|BG510595.1|BG510595
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: AGTTCTAGAAAG GTTTTGATGGACTTGGGGCACACCTATAAGCAAGGAAGTCCAGCTTATTTCEST: gi|23735380|gb|BU765969.1|BU765969
genomic: AGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGC-CACCTATAAGCAAGGAAGTTCAGCTTATTTC
EST: TCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|17519349|gb|BM188391.1|BM188391
genomic: TCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|20448749|gb|BQ252873.1|BQ252873
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTEST: gi|7326948|gb|AW620746.1|AW620746
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAG GTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCTEST: gi|17400294|gb|BM177076.1|BM177076
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTEST: gi|6566266|gb|AW233945.1|AW233945
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCTEST: gi|20812986|gb|BQ297464.1|BQ297464
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
EST: ACCAGACAAATATATATCAGGATGAACGACCCTTCATTAGTTCTAGAAAG GTTTTGATGGACTTGGGGCCACCTATAAGCAAGGAAGTCCAGCTTATTTCT
genomic: ACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgt ... acacgagaagGTTTTGATGGAATTGGGGCCACCTATAAGCAAGGAAGTTCAGCTTATTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGCAATTCTGCTATCAAGAAAATTTAGCCTTGCTTGGAGATGAGGTTTACCAGACGAATATATATCAGGATGAACGACCCTTCATCAGTTCTAGAAAGgtatgcttgttgtgctgcagcgctggtaaactgatattttgcctcagttgttaatgtgaactaataatatatacttttctacacgagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG