1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TACCCTTGTTCCATACTACCTTGAAGAGACAGCAAATTGGGGTCTTGATGTTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttttgtctttacaatgttatgtttccactctgtttcaacattaaatttacaaagctaaacacttaaatgtttggaagatgctgaatcaatgtg...
species | Glycine max |
transcript | GLYMA02G04320.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|5606534|gb|AI900632.1|AI900632
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|15204829|gb|BI427597.1|BI427597
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|17518503|gb|BM187545.1|BM187545
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|13125648|gb|BG316218.1|BG316218
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|20498019|gb|BQ272949.1|BQ272949
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|14999822|gb|BI320636.1|BI320636
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|22525213|gb|BU084024.1|BU084024
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|120534088|gb|EH262221.1|EH262221
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|22522320|gb|BU081131.1|BU081131
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: CAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|120529217|gb|EH257351.1|EH257351
genomic: CAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|120531769|gb|EH259902.1|EH259902
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|31561742|gb|CD487580.1|CD487580
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|120530295|gb|EH258429.1|EH258429
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|22525567|gb|BU084378.1|BU084378
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: AAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|37996526|gb|CF808115.1|CF808115
genomic: AAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|23064220|gb|BU578993.1|BU578993
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|13562529|gb|BG550749.1|BG550749
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGNTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|120495797|gb|EH223964.1|EH223964
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATA-CT GTTAAAGCAATGGTGATCATAAATC-TGGAAACCEST: gi|17519349|gb|BM188391.1|BM188391
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACC
EST: CTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|20448749|gb|BQ252873.1|BQ252873
genomic: CTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|192313436|gb|FK005516.1|FK005516
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|7326948|gb|AW620746.1|AW620746
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|17400294|gb|BM177076.1|BM177076
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|6566266|gb|AW233945.1|AW233945
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTTEST: gi|22522287|gb|BU081107.1|BU081107
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
EST: TTAATGAACTTCGTCAATCAGTTGAGCAGGCTCGCTTTAAAGGAATAACT GTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
genomic: TTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttt ... ttttgagtagGTTAAAGCAATGGTGATCATAAATCCTGGAAACCCTACTGGTCAATGCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACCCTTGTTCCATACTACCTTGAAGAGACAGCAAATTGGGGTCTTGATGTTAATGAACTTCGTCAATCAGTTGAACAGGCTCGCTTTAAAGGAATAACTgtatgtgttttgtctttacaatgttatgtttccactctgtttcaacattaaatttacaaagctaaacacttaaatgtttggaagatgctgaatcaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA