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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgcttttaagtatgtttgattctgctatttagaattcacatctgtgcaagaattaataatgaatttctgttgttgttagcctctattccctggt...

Basic information

species Glycine max
transcript GLYMA02G01220.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01220.3 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g04340.2 (Oryza sativa), 5'ss of exon 8
CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgcttttaagtatgtttgattctgctatttagaattcacatctgtgcaagaattaataatgaatttctgttgttgttagcctctattccctggt
||| ||||| || ||||| ||||||||||| ||||| ||||| || || |||||| | ||||| ||||||||||| |||| ||||||  | || || ||||||             | |   |||  ||  |    |  || ||  ||  |||||   |          ||| |  | || ||    |  |         
CTACAGAGCTCCAGAGCTCATATTTGGTGCTACTGAATACACAACAGCGATTGATGTTTGGTCTGCCGGTTGTGTGCTTGCTGAACTCCTCCTGGGGCAGgtaagagatcacattatttacatgaggcttttgg--accatccagctcattgcaactgtctgcctaagctttatcctttttttgttttaaaag-------

upper sequence: GLYMA02G01220.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgctt-ttaagtatgtttgat-tctgctatttagaattcacatctgtgcaagaat--taataatgaatt-tctgttgttgttagcctctattccctggt
|||| |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||  | | ||||||| ||||||| || |||     |   ||    |||  | ||  ||   ||||   |||  | | |    | | ||  ||||||  | || ||| ||| ||| ||               
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcag---------------

upper sequence: GLYMA02G01220.3 (Glycine max), 5'ss of exon 8
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 8
CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgcttttaagtatgtttgattctgctatt-tagaattcac-atctgtgcaagaattaataatgaatttctgttgttgttagcctctattccctggt
 ||  | || || || |||||||||||||||||||| ||||| || ||||| || ||||||||  | || || || || | |||  || | ||||| |||||    | | |    ||   |   | ||| | ||| |   | ||||  |||   |||  |||   | ||                                 
TTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCTGGTCGACTGGATGCGTTCTGGCTGAGTTACTTCTTGGTCAGgttgtatacctc---gtccttgcaactcttccattatgccactcaccgtctcatcaatcatttccactgtgcag----------------------------

upper sequence: GLYMA02G01220.3 (Glycine max), 5'ss of exon 8
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 8
CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgcttttaagtatgtttgattctgctatt-tagaattcac-atctgtgcaagaattaataatgaatttctgttgttgttagcctctattccctggt
|||  | || || || |||||||||||||||||||| ||||| || ||||| || ||||||||  | || || || || | |||  || | ||||| |||||    | | |    ||   |   | ||| | ||| |   | ||||  |||   |||  |||   | ||                                 
CTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCTGGTCGACTGGATGCGTTCTGGCTGAGTTACTTCTTGGTCAGgttgtatacctc---gtccttgcaactcttccattatgccactcaccgtctcatcaatcatttccactgtgcag----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17023669|gb|BM094703.1|BM094703
EST:     TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAG                         GTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC
genomic: TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgct ... tcacatgcagGTTTTAGGAACCCCGACAAGGGAAGAAATCAAGTGTATGAATCCTAATTAC