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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgcttttaagtatgtttgattctgctatttagaattcacatctgtgcaagaattaataatgaatttctgttgttgttag

Basic information

species Glycine max
transcript GLYMA02G01220.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os05g04340.2 (Oryza sativa), 5'ss of exon 8
CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatc--ttgcttttaagtatgtttgattct---gctatttagaat-tcacatctgtgcaagaattaataatgaatttctgttgttgttag--
||| ||||| || ||||| ||||||||||| ||||| ||||| || || |||||| | ||||| ||||||||||| |||| ||||||  | || || ||||||     |    |||  ||  |  |  | |    | ||  ||    |  || ||||    |  | |    |    || | ||||| | |   
CTACAGAGCTCCAGAGCTCATATTTGGTGCTACTGAATACACAACAGCGATTGATGTTTGGTCTGCCGGTTGTGTGCTTGCTGAACTCCTCCTGGGGCAGgtaagagatcacattatttacatgaggcttttggaccatccagctcattgcaactgtct--gcctaagctttatcctttttttgttttaaaag

upper sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 8
CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgctt-ttaagtatgtttgat-tctgctatttagaattcacatctgtgcaagaat--taataatgaatt-tctgttgttgttag
|||| |||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||  | | ||||||| ||||||| || |||     |   ||    |||  | ||  ||   ||||   |||  | | |    | | ||  ||||||  | || ||| ||| ||| ||
CTATCGAGCACCTGAACTTATATTTGGTGCAACTGAATACACCACAGCCATTGATATCTGGTCAGCCGGCTGTGTTTTGGCTGAACTACTGCTTGGACAAgtaagcaacacattgtacatggcttatgccttacattttttatttcctttttaatatgtatgctaataagtacttatcttttgatgtcag

upper sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ07923 (Selaginella moellendorffii), 5'ss of exon 8
CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgcttttaagtatgtttgattctgctatt-tagaattcac-atctgtgcaagaattaataatgaatttctgttgttgttag
 ||  | || || || |||||||||||||||||||| ||||| || ||||| || ||||||||  | || || || || | |||  || | ||||| |||||    | | |    ||   |   | ||| | ||| |   | ||||  |||   |||  |||   | ||                  
TTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCTGGTCGACTGGATGCGTTCTGGCTGAGTTACTTCTTGGTCAGgttgtatacctc---gtccttgcaactcttccattatgccactcaccgtctcatcaatcatttccactgtgcag-------------

upper sequence: GLYMA02G01220.1 (Glycine max), 5'ss of exon 8
lower sequence: EFJ07216 (Selaginella moellendorffii), 5'ss of exon 8
CTATAGAGCACCTGAGCTTATATTTGGTGCAACTGAGTACACCACGGCCATTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgcttttaagtatgtttgattctgctatt-tagaattcac-atctgtgcaagaattaataatgaatttctgttgttgttag
|||  | || || || |||||||||||||||||||| ||||| || ||||| || ||||||||  | || || || || | |||  || | ||||| |||||    | | |    ||   |   | ||| | ||| |   | ||||  |||   |||  |||   | ||                  
CTACCGTGCTCCGGAACTTATATTTGGTGCAACTGACTACACAACAGCCATCGACATCTGGTCGACTGGATGCGTTCTGGCTGAGTTACTTCTTGGTCAGgttgtatacctc---gtccttgcaactcttccattatgccactcaccgtctcatcaatcatttccactgtgcag-------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193403349|gb|FK367699.1|FK367699
EST:     TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAG                         CCTCTATTCCCTGGTGAGAGTGGAGTAGATCGGCTTGTTGAAATTATCAAG
genomic: TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgct ... ttgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
EST: gi|207824407|gb|GD793767.1|GD793767
EST:     TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAG                         CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
genomic: TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgct ... ttgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
EST: gi|193398127|gb|FK361249.1|FK361249
EST:     GATATCTGGTTCTAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAG                         CCTCTATTCCCTGGTGAGAGTGGAGTAGATCGGCTTGTTGAAATTATCAAG
genomic: GATATCTGG-TC-AGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgct ... ttgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
EST: gi|15286220|gb|BI470111.1|BI470111
EST:     TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAG                         CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
genomic: TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgct ... ttgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
EST: gi|10254836|gb|BE822602.1|BE822602
EST:     TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAG                         CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
genomic: TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgct ... ttgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
EST: gi|298195934|gb|HO044325.1|HO044325
EST:     TTGATGTCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAG                         CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
genomic: TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgct ... ttgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
EST: gi|9259545|gb|BE347700.1|BE347700
EST:     TTTTTATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAT                         CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
genomic: TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgct ... ttgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
EST: gi|37994511|gb|CF806247.1|CF806247
EST:     TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAG                         CCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
genomic: TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgct ... ttgttgttagCCTCTATTCCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAG
EST: gi|27425418|gb|CA936938.1|CA936938
EST:     TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAG                         CCTCTATTCCCT
genomic: TTGATATCTGGTCAGCCGGTTGTGTACTTGGTGAACTATTGCTTGGCCAGgtatcttgct ... ttgttgttagCCTCTATTCCCT