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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGgttggaaatgttgtatctgagctgattaagtgaaccatcatttcagaatttcatttgcctttgaacttaccttgatgttttcaaaccatgtacctctatag

Basic information

species Glycine max
transcript GLYMA02G01060.3
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01060.3 (Glycine max), 5'ss of exon 8
lower sequence: AT4G01800.1 (Arabidopsis thaliana), 5'ss of exon 7
TGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGgttggaaatgttgtatctgagctgattaagtgaaccatcatttcagaatttcatttgcctttgaacttaccttgatgttttcaaaccatgtacctctatag
|||||| || || ||||| ||||| ||||| ||||| ||||| ||||| |||||| || | || ||||| || || ||||| || || |||||||| |||||||||||||     | |   ||  || | | |    |    |   ||| |    |  |||| |  ||                                 
TGATGGACTACATCAAGCTGTTGAAGCAAAAGAAGGCTTGCCTATTCAGAATGAATCTATTACTCTGGCGTCAATTAGTTATCAAAACTTCTTTCTGCAGgttggaaatgcatactttccactttttgatt-attgtttgcattgtaatgtataatatcttttatgttgtag-----------------------------

upper sequence: GLYMA02G01060.3 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0005g02610.t01 (Vitis vinifera), 5'ss of exon 8
TGATGGCCTTCACCAAGCAGTTGAGGCAAAGGAAGGGTTGCCAATTCAAAATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGgttggaa-atgttgtatctgagctgattaagtgaaccatcatttcagaatttcatttgcctttgaacttaccttgatgttttcaaa--ccatgtacctctatag
 ||||| |||||||| || ||||| ||||| ||||||||||| ||||||||||||||||| ||||| || || |||||||| ||||| |||||||| |||||||||| || || | ||  |  | |||   |||| |||  |||    ||||  ||| | | |     || |||  |  | | ||   | ||  ||   |  ||
CGATGGACTTCACCAGGCGGTTGAAGCAAAAGAAGGGTTGCCCATTCAAAATGAAACTGTGACGCTAGCCTCAATCAGTTATCAGAACTTCTTTCTCCAGgttggaacatcttatttcccaaatcatttcatgaagcat-gtttggatatttactttccatct---tctagctttctagtgttaatttctattcactgttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692056|gb|AW760172.1|AW760172
EST:     TAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAG                         TTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAA
genomic: TAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGgttggaaatg ... acctctatagTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAA
EST: gi|23731376|gb|BU763804.1|BU763804
EST:     CTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAG                         TTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAA
genomic: CTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGgttggaaatg ... acctctatagTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAA
EST: gi|16278936|gb|BI943171.1|BI943171
EST:     ATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAG                         TTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAA
genomic: ATGAAACTGTAACGCTGGCTTCTATCAGTTACCAGAATTTCTTTCTTCAGgttggaaatg ... acctctatagTTCCCCAAACTTTGTGGTATGACTGGCACTGCAGCAACAGAAAGTACAGAA