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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTGgtgggttattcatttcaagtactattacgctttatccacaaattgtatatacttggcattatctgtaatttctagacagaaaagatgtatcacaagcttg...

Basic information

species Glycine max
transcript GLYMA01G43470.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43470.5 (Glycine max), 5'ss of exon 8
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 5'ss of exon 8
CAATTGTAAGCTTCGGAAAGGTTACCCCTGAACAAAAGCAAGAAGTTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTGgtgggttat-tcatttcaagtactattacgctttatccacaaattgtatatacttggcattatctgtaatttctagacagaaaagatgtatcacaagcttg---
||||||| ||||| || |||||||| |||||||||| | ||||||||||||| | ||| ||||  |||||||  ||||| |||||||| ||| |||| || ||| | ||||||  || |||| |  || ||   ||  |||| | |       | | |  | ||||   |   |     | || || | |    |    
CAATTGTGAGCTTTGGCAAGGTTACACCTGAACAAAGGGAAGAAGTTGAAAAGTTTGGTTTGGCCATATATTATTGGGAGGAATTCTTGCAACTGgtaggctatgtgatttcatatattatt-cttttcatgttcag-ttgtttgt--caaaaaatgttggcaattgacatgaatctgtgctgcatgaaagttatctat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19346911|gb|BM891799.1|BM891799
EST:     TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTG                         GGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGT
genomic: TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTGgtgggttatt ... tctgccacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGT
EST: gi|209718138|gb|BW657797.1|BW657797
EST:     TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTG                         GGTCAAAATCAGAGTTTTGATCTTCCTATTAA
genomic: TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTGgtgggttatt ... tctgccacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAA
EST: gi|308097989|gb|HO761160.1|HO761160
EST:     TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTG                         GGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGT
genomic: TTGAAAATTCTGGGTTGGAAATATATTCATGGGATGAATTCTTACAAGTGgtgggttatt ... tctgccacagGGTCAAAATCAGAGTTTTGATCTTCCTATTAAGAAAAGGAGTGACATCTGT