Sequence
atgc intronic sequence ATGC exonic sequenceTTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAGATGATGAACTTGTAATTATTCACCTAGGTGATTGCTTGTGGAAGGAAAGAAGTGAGgtacaattctgtcttttatttattttctttaatgactttggtacttttccattctgcttctcatttaagacacttattttag
Basic information
species | Glycine max |
transcript | GLYMA01G41800.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G41800.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os06g01650.2 (Oryza sativa), 5'ss of exon 6
TTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAGATGATGAACTTGTAATTATTCACCTAGGTGATTGCTTGTGGAAGGAAAGAAGTGAGgtacaattctgtctt-ttatttattttctttaatgactttggtacttttccattctgcttctcatttaagacacttattttag
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TTGGCAAGAGAATTTGGCTATTATAACTGCAAACAGGACGAAAGGTGATGATCTTGTAATTACGCACCTTGGAGATTGCCTCTGGAAAGAGAAAAATGAGgtttgaatctggctagttgagtatatgatttattgacat-ggttttgtcaaataccttacatatttttatgcag---------
upper sequence: GLYMA01G41800.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 6
TTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAGATGATGAACTTGTAATTATTCACCTAGGTGATTGCTTGTGGAAGGAAAGAAGTGAGgtacaattctgtcttt-tatttattttctttaatgactttggtacttttccattctgcttctcatttaagacacttattttag-------------
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TTGGGAAGAGAATTTGGCTGTGATAACTGCCAATAGAACAAAAGATGATGAACTTGTACTTATTCATCTTGGAGATTGCTTATGGAAGGAAAGAAGTGAGgtata-tgctgcatgtacatttatttaacatgtttacctata-gtctttcagtcctaattctgaatttttatgcttacatgagagttatgattcag
upper sequence: GLYMA01G41800.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0021g02730.t01 (Vitis vinifera), 5'ss of exon 7
TTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAGATGATGAACTTGTAATTATTCACCTAGGTGATTGCTTGTGGAAGGAAAGAAGTGAGgtaca-attctgtcttttatttattttctttaatgactttggtacttttccattc-----tgcttctcatttaagacacttattttag-----------------
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ATGGGAAGAGAATTTGGCCATAATAACTGCTAACAGAACAAAAGATGATGAGCTTGTTATTATTCATCTTGGTGATTGCCTATGGAAGGAGAGGGGTGAGgtatatgctctatggtttctttacact-tgagttgtctcctgttctttttctccaaaaggtgtcagtcctcctcggcattgcccttacagataactattgtacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15814640|gb|BI786915.1|BI786915EST: AACTTGTAATTATTCACCTAGGTGATTGCTTGTGGAAGGAAAGAAGTGAG ATTACTGCCGCACACATCTGCTATTTAGTTGCTGAAGCAAACTTTGAGTCA
genomic: AACTTGTAATTATTCACCTAGGTGATTGCTTGTGGAAGGAAAGAAGTGAGgtacaattct ... cttattttagATTACTGCCGCACACATCTGCTATTTAGTTGCTGAAGCAAACTTTGAGTCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGGGAGGAGAATCTGGCTGTAATAACTGCAAACAGAACCAAAGATGATGAACTTGTAATTATTCACCTAGGTGATTGCTTGTGGAAGGAAAGAAGTGAGgtacaattctgtcttttatttattttctttaatgactttggtacttttccattctgcttctcatttaagacacttattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT