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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGTGAACAGgtcagacgccagtttttcaggctgtttaattgtctgctgatatttcatgcctgagctagacagtccctttgaggtcttacagtctttttctcatactgcctttgttgggggatgaatttggtccatatttggcttgcag

Basic information

species Glycine max
transcript GLYMA01G41790.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41790.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G47490.1 (Arabidopsis thaliana), 5'ss of exon 4
TCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGTGAACAGgtcagacgccagtttttcaggctgtttaattgtctgctgatatttcatgcctgagctagacagtccctttgaggtcttacagtctttttctcatactgcctttgttgggggatgaatttggtccatatttggcttgcag
|||||| |  ||||| |  |||| ||||||| | ||||||||||||||||| || || |||||||| || |||||| | ||  ||||||||||  |||||||  |   |   | ||    ||| |  || |      ||   | |  ||| || | |           | || |||||| | |  |                                                     
TCTTCTGGCTTCTGGCAGGAAGATGGAGGCTCTCCAATGTGCACAAGAAGGTCATTTATGGGGACCAGCGCTTGTTATCGCAGCACAACTTGGGCAACAGgtttgtttc---tcttgattgctatagaactaaacattgcactgtagtgcttg-gttgactgacttggtcgatgtctta-attgatgcag-------------------------------------------------

upper sequence: GLYMA01G41790.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0229g00030.t01 (Vitis vinifera), 5'ss of exon 4
TCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGTGAACAGgtcagacgccagtttttcaggctgtttaattgtctgctgatatttcatgcctgagctagacagtccctttgaggtcttacagtctttttctcatactgcctttgttgggggatgaatttggtccatatttggcttgcag
|||||| || ||||| | |||||| |||||| |||| |||||||||||||| || |||||||||||||| |||||||| ||| ||||||| ||||| |||||  | |  | | || | |  ||  || ||  | |  |   |       |  |   ||    |      || ||| ||  | ||  |                                                    
TCTTCTGGTTTCTGGTAGAAAGAAAGAGGCTCTACATTGTGCACAAGAAGGGCAGTTGTGGGGACCTGCCCTTGTTCTTGCTGCACAACTCGGTGATCAGgtttgtc--ctgattcttaaactcatttatcatttttttccaacaatgactggcagtaatttgcttgggtgtggttttggaatcaatgcag------------------------------------------------

upper sequence: GLYMA01G41790.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv15s0021g02730.t01 (Vitis vinifera), 5'ss of exon 5
TCTTCTTGTCTCTGGGAAAAAGAAGGAGGCTTTACAATGTGCACAAGAAGGACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGTGAACAGgt-cagacgccagtttttcaggctgtttaattgtctgctgatatttcatgcctgagctaga-cagtccctttgaggtcttacagtctttttctcatactgc---ctttgttgggggatgaatttggtccatatttggcttgcag-------------
 |||||||||||||| | ||| ||||||||||||  |||||||  |||||| ||||| |||||||||||||||||||||||| | ||||||||||| ||||| |  |  | ||  | |     ||||    | ||   |  | |  |||   |||  | |  || |||   |   |      | |   || ||   |   |   | |  ||      |  ||   | |  | | | | || |               
GCTTCTTGTCTCTGGTAGAAAAAAGGAGGCTTTAGGATGTGCAATAGAAGGTCAATTATGGGGACCTGCACTTGTTCTGGCTGCTCAACTTGGTGATCAGgttctcatacaagcatatttaattgttc---tttccattcctttaccatatttgaattggctcaatcctgatctagcagaggaattcattccttggatgtcaaacctgatttcaatttttatgctgacactctcttgtttcctttaatttcatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21888423|gb|BQ741636.1|BQ741636
EST:     GACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGTGAACAG                         TTCTATGTTGATACAGTGAAGCAAATGGCACTTCGCCAGCTGGTTTCAGGG
genomic: GACAATTGTGGGGACCTGCACTTGTTCTGGCTTCACAACTTGGTGAACAGgtcagacgcc ... tggcttgcagTTCTATGTTGATACAGTGAAGCAAATGGCACTTCGCCAGCTGGTTTCAGGG