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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGTGACGAAAAGATTGCAAGCTAATGATTTTTCAACATTACCTGAGGCTCATGCATGCACTGCTGGGTTGAAATCCTTGACTACTACGGCAACTGCTgtatgttattacttctgttcatttctctactcattggtcttagacttagtttaatttaattagttacttagcggctttagatagcatttaaaatatggtt...

Basic information

species Glycine max
transcript GLYMA01G41600.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41600.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G35690.1 (Arabidopsis thaliana), 5'ss of exon 7
GGATGTGACGAAAAGATTGCAAGCTAATGATTTTTCAACATTACCTGAGGCTCATGCATGCACTGCTGGGTTGAAATCCTTGACTACTACGGCAACTGCTgtatgttattacttctgttcatttctctactcattggtcttagacttagtttaatttaattagtta--cttagcggctttagatagcatttaaaatatggtt
 ||||| || |||||| |  | || | ||||||  ||||||| ||||| |||||||||||||||||||| ||||| ||  |||||||  | || ||  ||||||| |          ||||  |||  ||| |||      | | | |||| ||| | || || ||  ||  |    ||| | |     ||||||       
TGATGTAACAAAAAGACTAGAGGCCAGTGATTTCGCAACATTGCCTGAAGCTCATGCATGCACTGCTGGATTGAAGTCTATGACTACCTCAGCCACCTCTgtatgct----------ttcaaatcttaacttatt------aaaataagttgaatattatcagctaaactgtgttttttttgttgttggttaaaag------

upper sequence: GLYMA01G41600.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv00s0389g00020.t01 (Vitis vinifera), 5'ss of exon 6
GGATGTGACGAAAAGATTGCAAGCTAATGATTTTTCAACATTACCTGAGGCTCATGCATGCACTGCTGGGTTGAAATCCTTGACTACTACGGCAACTGCTgtatgttattacttctgttcatttctctactcattggtcttagacttagtttaatttaattagttacttagcggctttagatagcatttaaaatatggtt
|||||||||  ||||||||||||| |||||||| |||||||| ||||| |||||||| ||||| || || ||||| || ||||||||  | ||||||||||||||| |    |    |||  || | ||    ||  || |  ||||| |||   | | |  ||   |  | |  | |  | |  |||| | |  |    
GGATGTGACCCAAAGATTGCAAGCCAATGATTTCTCAACATTGCCTGAAGCTCATGCCTGCACAGCGGGTTTGAAGTCTTTGACTACATCTGCAACTGCTgtatgtaacatttgtcattcccttgtttaaaattttttcctccacttattttctctgattgtgtgtgtgtgtgtgtatgtacaagatttgataagttcaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16349011|gb|BI974606.1|BI974606
EST:     CTCATGCATGCACTGCTGGGTTGAAATCCTTGACTACTACGGCAACTGCT                         GATGGAATTGAAGAATGCCGTAAACTATGTGGCGGTCATGGTTACCTTTGT
genomic: CTCATGCATGCACTGCTGGGTTGAAATCCTTGACTACTACGGCAACTGCTgtatgttatt ... caatttccagGATGGAATTGAAGAATGCCGTAAACTATGTGGCGGTCATGGTTACCTTTGT
EST: gi|105635049|gb|DW247750.1|DW247750
EST:     CTCATGCATGCACTGCTAGGTTGAAATCCTTGACTACTACGGCAACTGCT                         GATGGAATTGAAGAATGCCGTAAACTATGTGGCGGTCATGGTTACCTTTGT
genomic: CTCATGCATGCACTGCTGGGTTGAAATCCTTGACTACTACGGCAACTGCTgtatgttatt ... caatttccagGATGGAATTGAAGAATGCCGTAAACTATGTGGCGGTCATGGTTACCTTTGT