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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAAGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAGgttggccatctatattagcctatgtgttctaatcttaagtttccatgcgttttaaagtgtatgggtgttatatgttaattttccttaaatttatctgtgt...

Basic information

species Glycine max
transcript GLYMA01G39330.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183033|gb|HO028296.1|HO028296
EST:     AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAG                         ATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG
genomic: AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAGgttggccatc ... tgtcttgcagATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG
EST: gi|192326076|gb|FK016228.1|FK016228
EST:     GGCTCCAAA-TGCATCGTGGGAATTGGTTTCATCACTTTTGCTAGTGCAG                         ATTCTGTGGAGAATTTGATGT
genomic: GGCTCCAAAATGCATCGTGG-AATTGGTTTCATCACTTTTGCTAGTGCAGgttggccatc ... tgtcttgcagATTCTGTGGAGAATTTGATGT
EST: gi|193362647|gb|FK327389.1|FK327389
EST:     AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAG                         ATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG
genomic: AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAGgttggccatc ... tgtcttgcagATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG
EST: gi|254318602|gb|GR832770.1|GR832770
EST:     AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAG                         ATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG
genomic: AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAGgttggccatc ... tgtcttgcagATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG
EST: gi|254337733|gb|GR845303.1|GR845303
EST:     AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAG                         ATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG
genomic: AGGCTCCAAAATGCATCGTGGAATTGGTTTCATCACTTTTGCTAGTGCAGgttggccatc ... tgtcttgcagATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCTG