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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGAATGCAGGGAATTCAGAGAATCAATCCTGGGAGTTATGCCTCACCAATGGgtacatttatcaaccttgattatccttctgtactaaggcttaatcttaattactgtccgttcttgaataaatatgtttatcag

Basic information

species Glycine max
transcript GLYMA01G37580.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37580.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g02750.t01 (Vitis vinifera), 5'ss of exon 8
TATGAATGCAGGGAATTCAGAGAATCAATCCTGGGAGTTATGCCTCACCAATGGgta---------catttatcaaccttga-ttatcct---tctgtactaag--gcttaatcttaat--tactgtccgttcttga-ataaatatgttta--tcag
| |||||| |||||||| |||||||||||||| ||||||||||| || || ||||||          ||  |  || |   | |||| ||    || |  |||     ||  |||  ||  |||||    ||| |||  |||  || ||||  ||||
TTTGAATGTAGGGAATTTAGAGAATCAATCCTTGGAGTTATGCCACATCACTGGgtaagacagaagtataaagtaaaccgaacttattctgtgccttttttaaactattttctctagatgatactggtaattcatgatgtaatcatctttaaatcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208022825|gb|GD821339.1|GD821339
EST:     GAGTTATGCCTCACCAATGG                         GCTAGGAGAGAAGATACTTTATTGAAGCTTGCCCACTTCAGGCGGCACAAG
genomic: GAGTTATGCCTCACCAATGGgtacatttat ... tgtttatcagGCTAGGAGAGAAGATACTTTATTGAAGCTTGCCCACTTCAGGCGGCACAAG