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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATGCACTGAAGTGGGAGTCCAAGAATCTATTTGCCCTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaattggttttgattccaggatgctagtacttttgtatggtatatttgagtagagatgtatatgattggtgccaatattgttgtcatatgctttag

Basic information

species Glycine max
transcript GLYMA01G37420.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G37420.1 (Glycine max), 5'ss of exon 8
lower sequence: AT2G18100.1 (Arabidopsis thaliana), 5'ss of exon 8
GTATGCACTGAAGTGGGAGTCCAAGAATCTATTTGCCCTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaattggttttgattccag--gatgctagtacttttgtatgg-tatatttgagtagagatgtatatgattggtgccaatattgttgtca-tatgctttag
|||  |  || | ||||| ||| ||||| |  ||||  ||||||||||||||||||||||||||||||||||||||    | |  ||  |    || |  |||    ||||    ||| |||  |           |  || | |   || ||||   | |   || |  ||
GTACACGGTGCAATGGGAATCCGAGAATATTATTGCAGTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaataatatatagttttatccaatacgtgtaaccatgtaaatctatctttttgctattgctctaagaatagatagtaacattgacatgaacttgttgcag

upper sequence: GLYMA01G37420.1 (Glycine max), 5'ss of exon 8
lower sequence: AT4G36210.2 (Arabidopsis thaliana), 5'ss of exon 7
GTATGCACTGAAGTGGGAGTCCAAGAATCTATTTGCCCTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaattggttttgattccaggatgctagtacttttgtatggtatatttgagtagagatgtatatgattggtgccaatattgttgtcatatgctttag
|||  | ||| | |||||||||||||||||  |     ||||||| || |||||||||||||||||||||||||||||||||| || | |  |   ||  |  ||  | |   |   |  | |    | |  |||  | |||    ||  || | ||    |      
GTACACGCTGCAATGGGAGTCCAAGAATCTTATCTTAGTGAGCACAGCGATTCAGGATTGGCTTACTTCAAgtaattggtttttatcctacta-aataacatgttgatgtaaaaatgtcaaattactaagattattgt-ggtattgattatgatttctccag------

upper sequence: GLYMA01G37420.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv04s0023g02940.t01 (Vitis vinifera), 5'ss of exon 8
GTATGCACTGAAGTGGGAGTCCAAGAATCTATTTGCCCTGAGCACTGCAATTCAGGATTGGCTTACTTCAAgtaattggttttgattcca-ggatgctagtacttttgtatggtatatttgagtagagatgtatatgattggtgccaatattgttgtcatatgctttag
|||||||||  | |||||||| ||||||||  ||||  | ||||||||||| || ||||||||||| |||||||||| |||| ||   ||  | ||||| |  || |  ||  | || |    | |     | | |   || |    | |||   || |  ||||  ||
GTATGCACTACAATGGGAGTCTAAGAATCTGATTGCTGTAAGCACTGCAATCCAAGATTGGCTTACATCAAgtaatttgtttggaactcatagctgctactgtttattaataat-tactgttatggcatcatttgtttgtgatcttcagatttccgtgaattgctgcag