Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAATTGTCAATAGCAGATAGTACAAAGGATCAAGGCAGCCAGTCAGACATGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgtctaataaatcccatgattatttgttatgttaaacattccccatgattatttgttttgttcttttaacatagtagattgatctgctgtattttatgcactaagtgataattggtgggtttttgcag

Basic information

species Glycine max
transcript GLYMA01G36990.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31305113|gb|CD390316.1|CD390316
EST:     TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
genomic: TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgtctaa ... gtttttgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
EST: gi|14990975|gb|BI316648.1|BI316648
EST:     TCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
genomic: TCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgtctaa ... gtttttgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
EST: gi|151396744|gb|EV266617.1|EV266617
EST:     TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
genomic: TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgtctaa ... gtttttgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
EST: gi|10847418|gb|BF070105.1|BF070105
EST:     TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
genomic: TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgtctaa ... gtttttgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
EST: gi|16997110|gb|BM086482.1|BM086482
EST:     TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
genomic: TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgtctaa ... gtttttgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
EST: gi|192294443|gb|FG987372.1|FG987372
EST:     TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
genomic: TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgtctaa ... gtttttgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
EST: gi|13789154|gb|BG651745.1|BG651745
EST:     TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCG                         CTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC
genomic: TGAGCAAATTGTTGGCCGATCAATCCTTTGTATCTTCTATCCTTGCATCGgtatgtctaa ... gtttttgcagCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAGGATTTGCTGGCTTCC