Sequence
atgc intronic sequence ATGC exonic sequenceGTCCACCTGGCTCCTGGAAGTAAATTTAATTTCCAAAAGTATATCAAAAGATCATTAGAAGATGACTTCAAGGTGGTCGTGGGAGTTAGgtaaaactaacaagtaacaacagtaaaatgtatatgcaacattatattagtattatgtaaggtttttccttgtatattggaaatctgtgctaactatgttattgacag
Basic information
species | Glycine max |
transcript | GLYMA01G36170.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G36170.1 (Glycine max), 5'ss of exon 8
lower sequence: AT5G65970.1 (Arabidopsis thaliana), 5'ss of exon 8
GTCCACCTGGCTCCTGGAAGTAAATTTAATTTCCAAAAGTATATCAAAAGATCATTAGAAGATGACTTCAAGGTGGTCGTGGGAGTTAGgtaaaactaacaagtaacaacagtaaaatgtatatgcaacattatattagtattatgtaaggtttttccttgtatattggaaatctgtgctaactatgttattgacag
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GCCCATTTAGCTCCAGGAAGAAAGTTCGACTTCCAGAAGTATATCAAAAGATCATTGGAAGACGATTTCAAGGTGGTAGTTGGAATAAGgtacg--tagcacaaaacagtgctaga--gctagtactgcgttg-agaggtgtttgttgacattgctgatactgtactgtgcag------------------------
upper sequence: GLYMA01G36170.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv07s0031g02240.t01 (Vitis vinifera), 5'ss of exon 8
GTCCACCTGGCTCCTGGAAGTAAATTTAATTTCCAAAAGTATATCAAAAGATCATTAGAAGATGACTTCAAGGTGGTCGTGGGAGTTAGgtaaaactaacaagtaacaacagtaaaatgtatatgcaacattatattagtattatgtaaggtttttccttgtatattggaaatctgtgctaactatgttattgacag----
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GTCCATTTAGCGCCAGGAAGTAAATTTAACTTCCAAAAATATATTAAAAGGTCTTTAGAAGATGACTTCAAGGTGGTTGTGGGGATCAGgtaattttcttttatt-------tgccactcttcttcttcttcttctt--ttttcccggatgtattctttggtatatt---attatgggacaattgtgttttggacttagttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208305574|gb|GE107027.1|GE107027EST: TATATCAAAAGATCATTAGAAGATGACTTCAAGGTGGTCGTGGGAGTTAG TCCTATCCTCTGGGCATCAGTTGTAGTTTACCTTCTCATCAAT
genomic: TATATCAAAAGATCATTAGAAGATGACTTCAAGGTGGTCGTGGGAGTTAGgtaaaactaa ... ttattgacagTCCTATCCTCTGGGCATCAGTTGTAGTTTACCTTCTCATCAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCACCTGGCTCCTGGAAGTAAATTTAATTTCCAAAAGTATATCAAAAGATCATTAGAAGATGACTTCAAGGTGGTCGTGGGAGTTAGgtaaaactaacaagtaacaacagtaaaatgtatatgcaacattatattagtattatgtaaggtttttccttgtatattggaaatctgtgctaactatgttattgacag
- - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG