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ACATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGgtatttagcttctcacttactccccccctccaaatgatggtttttaactgagaaagagcaaaaatagattttcatcatggaaaacaaaaatttagcagct...
species | Glycine max |
transcript | GLYMA01G35190.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAG TGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTTEST: gi|19938441|gb|BQ081721.1|BQ081721
genomic: GCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGgtatttagct ... acacatgcagTGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTT
EST: CTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAG TGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTTEST: gi|254345622|gb|GR855958.1|GR855958
genomic: CTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGgtatttagct ... acacatgcagTGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTT
EST: GCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAG TGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTTEST: gi|26059828|gb|CA802742.1|CA802742
genomic: GCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGgtatttagct ... acacatgcagTGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTT
EST: CTGAGCTTTTCTCTCCTT-GTCAATCTTTTCCCAGGTGCCAG TGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTTEST: gi|11274199|gb|BF324567.1|BF324567
genomic: CTGAGCTTTTCTCT-CTTCGTC-CTCTTTTCCCAGGTGCCAGgtatttagct ... acacatgcagTGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTT
EST: TAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAG TGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTTEST: gi|192299757|gb|FG990052.1|FG990052
genomic: TAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGgtatttagct ... acacatgcagTGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTT
EST: GCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAG TGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTTEST: gi|26048711|gb|CA785164.1|CA785164
genomic: GCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGgtatttagct ... acacatgcagTGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTT
EST: GCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAG TGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTTEST: gi|298163466|gb|HO012199.1|HO012199
genomic: GCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGgtatttagct ... acacatgcagTGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTT
EST: GCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAG TGAAGCGGATGAGATTTACAAAATATGTGGTGTAATAGGCAATCCAACCTT
genomic: GCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGgtatttagct ... acacatgcagTGAAGCGGATGAGATTTACAAAATATGTGGTGTGATAGGCAATCCAACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATGTGGGCAATGGGTGCTATAATGGCTGAGCTTTTCTCTCTTCGTCCTCTTTTCCCAGGTGCCAGgtatttagcttctcacttactccccccctccaaatgatggtttttaactgagaaagagcaaaaatagattttcatcatggaaaacaaaaatttagcagct
- - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaca