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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTGGAAGAGAAAAGAGCTCGGTTAGGTTTAGTGGAATGTGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatttgtgttgtgactttattagatccccattgccatattttttacactgtttatgtctcacattcttggttatttttcag

Basic information

species Glycine max
transcript GLYMA01G29420.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G29420.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv06s0004g06870.t01 (Vitis vinifera), 5'ss of exon 8
GGCTTTGGAAGAGAAAAGAGCTCGGTTAGGTTTAGTGGAATGTGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatttgtg-----ttgtgactttat--tagatccccattg----ccatattttttacac-tgtttatgtctcacattcttggttatttttcag-
||||||||||||||| || |||||  | ||| ||||||||||||| || ||||| ||  |||| || || |||||||| ||||| |||||||||||    | |||      |  | ||||| |  || ||||    ||    ||| | ||  |  |  ||  |  |      | | |     |   | ||  
GGCTTTGGAAGAGAAGAGGGCTCGTCTGGGTCTAGTGGAATGTGTGAACCATGATCTTTTGCAGCCATACCCTGTTCTCCATGAGAAGCCTGgtaagccttgtgtaaataatattaactttgtactaaatccatgatgtaatccagacttgctggatgtgcatccgcactgtactgtcaaagaggctgcatt

upper sequence: GLYMA01G29420.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 7
GGCTTTGGAAGAGAAAAGAGCTCGGTTAGGTTTAGTGGAATGTGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatattt---------gtgttgtgactttattagatccccattg----ccatattttttacac-tgtttatgtctc---acattcttggt-----tatttttcag-------------------------
|||||||||||||||  | |||||  | ||| ||||||||||||| |||||||| ||  | ||||| || |||||||| ||||||||||||||||| | |            |  ||||   |||   ||| || || ||    ||| || |  | |||    |||| | |    | |||||   |     || |||| |                          
GGCTTTGGAAGAGAAGCGGGCTCGACTGGGTCTAGTGGAATGTGTGAATCATGATCTTTTACAACCATACCCTGTTCTTCATGAAAAGCCTGgtaagaaaccctcttaacaagctttgttcttttgggagaacctcaatgggatccacatctagtgcacacaattatctttttggatattctctatatctgtaattttaaagctgaaacttgggttggctatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207829741|gb|GD804079.1|GD804079
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|193382756|gb|FK347675.1|FK347675
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATT
EST: gi|208304694|gb|GE103543.1|GE103543
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTG
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTG
EST: gi|207755316|gb|GD729911.1|GD729911
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|151404678|gb|EV274492.1|EV274492
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|208249339|gb|GE046796.1|GE046796
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTA
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTA
EST: gi|193715926|gb|FK655949.1|FK655949
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|207716007|gb|GD699385.1|GD699385
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|193470993|gb|FK436948.1|FK436948
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAAT
EST: gi|208073110|gb|GD868609.1|GD868609
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|193529807|gb|FK484018.1|FK484018
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|208114516|gb|GD912127.1|GD912127
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|208162457|gb|GD962278.1|GD962278
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|208161594|gb|GD961374.1|GD961374
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAA
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAA
EST: gi|208146105|gb|GD944808.1|GD944808
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|208072328|gb|GD870260.1|GD870260
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATAGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGA
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGAT-GTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGA
EST: gi|208335639|gb|GE137602.1|GE137602
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|208206382|gb|GE007535.1|GE007535
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|207799666|gb|GD770541.1|GD770541
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|193660626|gb|FK601674.1|FK601674
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|207800611|gb|GD775042.1|GD775042
EST:     CTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGAT
genomic: CTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGATGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGAT
EST: gi|193381878|gb|FK348435.1|FK348435
EST:     TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTG                         GTGATTGATGTTGCACATATCAAATTCACTGTATTGCTAATGCCCAATGGA
genomic: TGTTAATCATGAGCTCCTGCAACCTTATCCTGTTCTGCATGAAAAGCCTGgtaatatatt ... tatttttcagGTGAT-GATGTTGCACATATCAAATTCACTGTATTGCTAATGCCTAATGGA