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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAACAAGATTTGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagaccattttccattttcatgtgcccaatgatgtttaatgggttttcaacttattcttaatcttgtgtcatatag

Basic information

species Glycine max
transcript GLYMA01G27840.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g15840.1 (Oryza sativa), 5'ss of exon 8
CGAACAAGATTTGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagaccattt--tccattttcat-----gtgcccaatgatgtttaatgggttttcaacttattcttaatcttgtgtcatatag-
| || |   || | ||||||||||| ||||||||||||||||||||||||||   |||   |   |||||||||||  | | | ||||||     | ||||  |  || ||||      ||     |  |    |  ||  |    |||||||| |   | || | || | |   
CAAATAGAGTTCGGCTTTGGAACAAAGGTGTTGATTCTGAAAGTTTCCATCCTAAATTTCGGAAGCATGAAATGCGCATTAAATTGAGgtttgacctatttctttaatattcaatagcagtatgtgaaaaaaaattgtgcatagctaacttattttcctttttctctcttgttag

upper sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os07g01030.1 (Oryza sativa), 5'ss of exon 7
CGAACAAGATTTGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagaccattttccattttcatgtgcc------caatgatgtttaatgggttttcaacttattcttaatcttgtgtcatatag-------------------------------------------------------------------------------
| || |||||  | ||||||||||||||||||||||| ||||| |||||||| || |||       | ||||||||   ||| || | ||    |   |  ||  |  |||  ||||      || |   | |  |  |||  | || |  | ||   | |||  ||||  |                                                                                
CCAATAAGATACGCCTTTGGAACAAGGGTGTTGATTCAGAAAGCTTCCATCCCCGTTTCCGTAATGACGAAATGCGTGCAAGGCTAACgtatgtaatctcctctgtgctcagttgcctttttgcagtacagatgcaatggtgctaaattgctactggttgttgcctcattcattatgtagagaatattttgaaatgagcaattatattccctgtctaacagcatgcttatactttcccttttcctctatcag

upper sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G477503_T01 (Zea mays), 5'ss of exon 7
CGAACAAGATTTGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtg-cagaccattttccattttcatgtgcccaatgatgtttaatgggttttcaacttattcttaatcttgtgtcatatag-------------
| || |  ||  | ||||||||||| ||||||||||||| ||| ||||||||  |||||      ||||| |||||| | || || |||    |  |  | | |  | ||| ||       ||   |  |    |||   |     |   ||| ||| |||    |               
CTAATAGAATACGCCTTTGGAACAAAGGTGTTGATTCTGCAAGCTTCCATCCTAGATTCCGCAGTCATGAGATGCGAGTCAGGCTAAGgcaatactctgtctcctttcttcctgaatgttctg-catgcagcaagttgagatagactgtataagcttatgttgcttgatgtattctttcag

upper sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G100652_T03 (Zea mays), 5'ss of exon 6
CGAACAAGATTTGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagaccattttccattttcatgtgcccaatgatgt-ttaatgggttttca-acttattcttaatcttgtgtcatatag--------------
| || || ||  | |||||||||||||||||||| || ||||| |||||||| || |||     |   |||||||| | ||| || | || ||  |   || |  ||  | | ||  || |  ||| ||  |  ||||  |  |     |  ||   ||   |  ||                
CCAATAAAATACGCCTTTGGAACAAGGGTGTTGACTCAGAAAGCTTCCATCCTCGTTTCCGCAACATGGAAATGCGTTCAAGGCTAACgtacatgcatattcctcttcccttttgtgcagttttgtatttgtccgtttcaatgcccgggccgaactgtggtgctaatgttttcgttggagcag

upper sequence: GLYMA01G27840.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g01940.t01 (Vitis vinifera), 5'ss of exon 8
CGAACAAGATTTGTCTTTGGAACAAGGGTGTTGATTCTGAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagaccattttccat----------tttcatgtgcccaatgat---gtttaatgggttttcaacttattcttaatcttgtgtcatatag---------
| ||||  ||| |||||||||| ||||| ||||| ||||||||||||||||| || | | | || || |||||||| |||||||| |||||    || |||  |||          |||||| ||||    |||     || |   | | |  || | || ||  | |  | |  | |           
CTAACAGAATTCGTCTTTGGAATAAGGGGGTTGACTCTGAAAGTTTCCATCCTCGTTACTATTCTCACGAAATGCGTTTAAGACTAAGgtgggtcccttttctcatcccctctaactttcat-tgccttgggattctactttacatgctatgtaccttttttttttttcttttttttttttctaaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397927|gb|EV267800.1|EV267800
EST:     GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAG                         CAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
genomic: GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagacca ... tgtcatatagCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
EST: gi|20812039|gb|BQ296517.1|BQ296517
EST:     GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAG                         CAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
genomic: GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagacca ... tgtcatatagCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
EST: gi|8669562|gb|BE190669.1|BE190669
EST:     GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAG                         CAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
genomic: GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagacca ... tgtcatatagCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
EST: gi|298196742|gb|HO041485.1|HO041485
EST:     GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAG                         CAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
genomic: GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagacca ... tgtcatatagCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
EST: gi|8669561|gb|BE190668.1|BE190668
EST:     GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAG                         CAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
genomic: GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagacca ... tgtcatatagCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
EST: gi|254334106|gb|GR849024.1|GR849024
EST:     GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAG                         CAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
genomic: GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagacca ... tgtcatatagCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
EST: gi|21888687|gb|BQ741900.1|BQ741900
EST:     GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAG                         CAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT
genomic: GAAAGTTTCCATCCGCGATTCAAGTCCCATGAAATGCGATTAAGACTGAGgtgcagacca ... tgtcatatagCAATGGTGAACCTGAGAAGCCCTTGATAGTTCATGTTGGACGGCTTGGAGT