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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATATTCTTCCCCAACTGTCGTAGATTTGGATGGTGACGGGAATCTTGACATTCTTGTTGGAACTTCGTATGGCCTGTTTTATGTGTTGGATCATCATGgtaatgtctagagactgcttccttactatttctgttgttttaaaaatgttcaggttctatgttgccttcattgattttctctcagattttatttcgttaa...

Basic information

species Glycine max
transcript GLYMA01G27250.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G27250.1 (Glycine max), 5'ss of exon 8
lower sequence: LOC_Os03g61050.1 (Oryza sativa), 5'ss of exon 8
ATATATTCTTCCCCAACTGTCGTAGATTTGGATGGTGACGGGAATCTTGACATTCTTGTTGGAACTTCGTATGGCCTGTTTTATGTGTTGGATCATCATGgtaatgtctagagactgcttccttactatttctgttgttttaaaaatgttcaggttctatgttgccttcattg--attttctctcagattttatttcgttaa
  ||||||||| || || || || |||||||||||||| || ||| | || ||||||||||||||||| | |||| ||||||||||  | ||||||| ||||||  |||  |  |  | |  |  | |||     |   | || |   || || |    | |||  |||  ||   | |      || |    |  | | ||
GCATATTCTTCGCCGACCGTGGTTGATTTGGATGGTGATGGAAATTTGGATATTCTTGTTGGAACTTCCTTTGGCTTGTTTTATGTTATCGATCATCGTGgtaaattcttaa--cctcataatatcaattctgaatccataaacagctttaagctgacttattgttttctatgctgtgtatatctagctcccgtagcataaa

upper sequence: GLYMA01G27250.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv08s0007g01790.t01 (Vitis vinifera), 5'ss of exon 8
ATATATTCTTCCCCAACTGTCGTAGATTTGGATGGTGACGGGAATCTTGACATTCTTGTTGGAACTTCGTATGGCCTGTTTTATGTGTTGGATCATCATGgtaatgtctagagactgcttccttactatttctgttgttttaaaaatgttcaggttctatgttgccttcattgattttctctcagattttatttcgttaa--
||||||||||| |||||||| || |||||||||||||| |||||| | ||||||||||||||||| || |  ||| ||||||||||  | ||||||||||||||| |    ||| ||     ||  | ||  |  | | | |   |||   | | | ||  |    ||   | ||| | ||| || ||   ||| ||| |  
ATATATTCTTCTCCAACTGTTGTTGATTTGGATGGTGATGGGAATTTGGACATTCTTGTTGGAACCTCCTTCGGCTTGTTTTATGTCCTTGATCATCATGgtaatcttctaagattggaattttttttttaattctttctaattgatgcatatgat-tagatcatattttctcattat-tcttagcttgattttggtttaaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402169|gb|EV271982.1|EV271982
EST:     CATTCTTGTTGGAACTTCGTATGGCCTGTTTTATGTGTTGGATCATCATG                         GTAAGGTTAGACAAAAGTTTCCTCTTGAAATGGCTGAGATTTAAGGAGCTG
genomic: CATTCTTGTTGGAACTTCGTATGGCCTGTTTTATGTGTTGGATCATCATGgtaatgtcta ... tctcaaatagGTAAGGTTAGACAAAAGTTTCCTCTTGAAATGGCTGAGATTCAAGGAGCTG