Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGCATCTGAACTTGATGAACTATCTGGTCCTGATAAAGAACCAGCTAGAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctatgctactttttcatttgcttgtgctgaagacatgtatcattcttctgcatcccattgaggtcataagcactgattttgattaggtaaactt...

Basic information

species Glycine max
transcript GLYMA01G22620.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G22620.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g02860.t01 (Vitis vinifera), 5'ss of exon 8
TGTTGCATCTGAACTTGATGAACTATCTGGTCCTGATAAAGAACCAGCTAGAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctatgctactttttcatttgcttgtgctgaagacatgtatcat-tcttctgcatcccattgaggtcataa--gcactgattttgattaggtaaactt---------------------------------------------------------------------------------------------------
|||  |||| || ||||||| |||   ||| || || || ||||||    ||||||||||| |||||||||| |||||||| ||||||||||| |||||||||    | |     || | ||| || || || | ||   ||   |||  | |||| |     |  ||    || |  | | |  |||   ||   | || ||                                                                                                   
TGTATCATCAGAGCTTGATGCACTGAGTGGACCAGAGAAGGAACCAAACCGAGAGTTTTTGATTCTGCAAGGCGTGCGTTTTGCTTTCCGTGTTCATCAGgta----tgtttcgtttctgcatctgtttctgtt-aatttatacttcacatgttctacggtttacagaacaaatgatagaagtattttattttccctcaaattgggaagaacaaaacgtaaaatttgtagcaatgtgaataacaagaagttgaaaattgtgacaagtatggaaacaacattctgaattggacttgttcccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6134519|gb|AW132912.1|AW132912
EST:     GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAG                         TTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
genomic: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctat ... ctcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
EST: gi|192294897|gb|FG987586.1|FG987586
EST:     GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAG                         TTTGCAG-AGGCTTTGATGCAGAGAGCATGAAAGCTTTTGAAGAACTAAAG
genomic: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctat ... ctcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
EST: gi|192309845|gb|FK001389.1|FK001389
EST:     GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTATCCATCAG                         TTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
genomic: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctat ... ctcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
EST: gi|31305545|gb|CD390748.1|CD390748
EST:     GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAG                         TTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG
genomic: GAGAGTTTTTGGTTCTGCAAGGTGTGCGTTTCGCTTTCCGTGTCCATCAGgtaattctat ... ctcttttcagTTTGCAGGAGGCTTTGATGCAGAGAGCATGAAGGCTTTTGAAGAACTAAGG