Sequence
atgc intronic sequence ATGC exonic sequenceGGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACAgtaagttatttacttgattgtatctagctgttcattgttgcctttaggtttgatcatttcttttgtggctatgtttactatgcctcagtggcaacattat...
Basic information
species | Glycine max |
transcript | GLYMA01G20810.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 8
lower sequence: GRMZM2G147811_T01 (Zea mays), 5'ss of exon 6
GGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACAgtaagttat------ttac-ttgattgtatctagct-gttcattgttgcctttaggtttgatcatttctt--ttgtggctatgtttactatgcctcagtggcaacattat
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GGAAAGGATGATGGTTTGCATATTGAGAGAAATGCTCTTCATGACAACTGGGATGATGCAGATGGGTACTACAgtaagttatgctatcttatgttcatttttccttgccagcttattgttctctcctgtgttgtccattcattcatttttcttgtttttgctattgtgcag------------
upper sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 8
lower sequence: AT1G13350.1 (Arabidopsis thaliana), 5'ss of exon 6
------------GGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACAgtaagttatttacttgattgtatctagctgttcattgttgcctttaggtttgatcatttcttttgtggctatgtttacta-tgcctcagtggcaacattat----------------------------------------------------------------------------
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GGCTATCTGCGAGGGAAAGGGAATGGCATTCCTATTGTAAGGAGTGGACTCGACGATAATTGGGATGATGCAGAAGGTTATTACAgtaagtgtttttattttgtctatgta-ttatttaagttcaaattc---tttgaagacctattt-gtgtataattccatgaacatttcattgctcgtgttttatcattcaactggaaaaggccttctaatatttgtcatcttaagtcttaacaatgaaagatcttctcttaattttag
upper sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 8
lower sequence: AT3G25840.1 (Arabidopsis thaliana), 5'ss of exon 6
---GGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACAgtaagttatttacttgattgtatctagctgttcattgttgcctttaggtttgatcatttcttttgtggctatgtttactatgcctcagtggcaacattat
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GGAGGGAAAGGTGATGGTGTTCCCATGGTGAGGAGCGGGCTTCATGATAATTGGGATGATGCAGAGGGTTATTATAgtaagt-gtgtttctctctacatttcaatcatgaatggtgaacgcac-ttttacgttttattttttcgttgtaaagattgagtctcctctcc--ttttag
upper sequence: GLYMA01G20810.1 (Glycine max), 5'ss of exon 8
lower sequence: Vv01s0011g03350.t01 (Vitis vinifera), 5'ss of exon 6
GGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACAgtaagttatttacttgattgtatctagctgttcattgttgcctttaggtttg-atcatttcttttgtggctatgtttactatgcctcagtggcaacattat
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GGAAGAGGAGATGGCTTACTAATTGAAAGGAGTGGTCTTCATGACAATTGGGATGATGCAGAGGGATACTATAgtcagt-atttgacgaatcatcatctgtgttttatttttattttcatttttctatcagtatttgaccagccatcatctttttatttttttaattgcctgaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193406996|gb|FK375227.1|FK375227EST: TTCACGACAATTGGGATGATGCAGAGGGTTATTACA GTTACCATTTCGGTGAAGTACTTTATGGCCGATATGAAGTCATTGCAGCTC
genomic: TTCACGACAATTGGGATGATGCAGAGGGTTATTACAgtaagttatt ... aattttgcagGTTACCATTTCGGTGAAGTACTTTATGGCCGATATGAAGTCATTGCAGCTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTAAAGGAGAAGGTTTACGGATTGAGAGGGGTGGCCTTCACGACAATTGGGATGATGCAGAGGGTTATTACAgtaagttatttacttgattgtatctagctgttcattgttgcctttaggtttgatcatttcttttgtggctatgtttactatgcctcagtggcaacattat
- - - - - - - - - - - - GAGAGG