1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAGgtatgcaagcttttctgaccatattgaataaaaatatgcacgcttattcacacatttatatcacgttaattgtttttcattaattgaatataaacagtag...
species | Glycine max |
transcript | GLYMA01G01070.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CATCTTCGGATCTGAAGGTGGTTGG-AACAAATTGAAGGATATATTAGAG ATCAATAGCACATCCCTGAAAATGCGGAAGATTGTTGTGCAACTCTGTGATEST: gi|192321290|gb|FK012051.1|FK012051
genomic: CATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAGgtatgcaagc ... ttcttttcagATCAATAGCACATCCCTGAAAATGCGGAAGATTGTTGTGCAACTCTGTGAT
EST: CATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAG ATCAATAGCACATCCCTGAAAATGCGGAAGATTGTTGTGCAACTCTGTGATEST: gi|192321770|gb|FK013190.1|FK013190
genomic: CATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAGgtatgcaagc ... ttcttttcagATCAATAGCACATCCCTGAAAATGCGGAAGATTGTTGTGCAACTCTGTGAT
EST: CATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAG ATCAATAGCACATCCCTGAAAATGCGGAAGATTGTTGTGCAACTCTGTGATEST: gi|18725174|gb|BM523601.1|BM523601
genomic: CATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAGgtatgcaagc ... ttcttttcagATCAATAGCACATCCCTGAAAATGCGGAAGATTGTTGTGCAACTCTGTGAT
EST: CATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAG ATCAATAGCACATCCCTGAAAATGCGGAAGATTGTTGTGCAACTCTGTGAT
genomic: CATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAGgtatgcaagc ... ttcttttcagATCAATAGCACATCCCTGAAAATGCGGAAGATTGTTGTGCAACTCTGTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATATCACATAGTTGTAATGCATCATGATACATCTTCGGATCTGAAGGTGGTTGGAAACAAATTGAAGGATATATTAGAGgtatgcaagcttttctgaccatattgaataaaaatatgcacgcttattcacacatttatatcacgttaattgtttttcattaattgaatataaacagtag
- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaaa