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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtctaacttgtttccttttctttaagtggggtgtttagtgttaactaagagagatgtattcaattaaaattttaaaagactttttttgtttgtct...

Basic information

species Glycine max
transcript GLYMA0084S00210.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31466779|gb|CD408807.1|CD408807
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCANAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|151395373|gb|EV265244.1|EV265244
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|120495393|gb|EH223560.1|EH223560
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|213615448|gb|DB965520.1|DB965520
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|19348874|gb|BM893406.1|BM893406
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|209724770|gb|BW672552.1|BW672552
EST:     AACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: AACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|120529743|gb|EH257877.1|EH257877
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTTTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|192299755|gb|FG990050.1|FG990050
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTACTTCAA-G                         GGGACTACTTATACTTCCAGCG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACT-CCAGCG
EST: gi|214006768|gb|DB987650.1|DB987650
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|209727805|gb|BW658729.1|BW658729
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|192314929|gb|FK010747.1|FK010747
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|15662186|gb|BI699557.1|BI699557
EST:     CTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: CTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|214009602|gb|DB988311.1|DB988311
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|51343312|gb|CO984045.1|CO984045
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|31465032|gb|CD407060.1|CD407060
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCNAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
EST: gi|120529184|gb|EH257318.1|EH257318
EST:     ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAG                         GGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG
genomic: ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtcta ... ttgttttcagGGGACTACTTATACTCCAGCGAAGTTCCCTCCAAAGCCTCTTAAATTATGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACACTAACGGCTGGTCTTGGTATGCTTAGTCGTATTTCAAAGgtattgtctaacttgtttccttttctttaagtggggtgtttagtgttaactaagagagatgtattcaattaaaattttaaaagactttttttgtttgtct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggtgt