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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTGAGAAGAAAGTATCGTGTTTCTGGGTTGACTTCTCAACCTACCAGAGAACTTGTgtaagttgtttctctttcaggtctcttcctactggcagtcttagaaggtatagtgattttccattagctcactaaataatgatgtgtttctttag

Basic information

species Glycine max
transcript GLYMA20G28970.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28970.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0020g04190.t01 (Vitis vinifera), 5'ss of exon 6
AAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACACAGAGGAAGTGTGAGAAGAAAGTATCGTGTTTCTGGGTTGACTTCTCAACCTACCAGAGAACTTGTgtaagttgtttctctttcaggtctcttcctactg-gcagtcttagaaggtatagtgattttccattagctcactaaataatgatgtgtttctttag-------
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AGGCCCTTAGAGGAGTAAAAGTTGAAGTAACACACAGAGGGAATGTACGAAGAAAGTATCGTGTATCAGGACTAACATCCCAACCTACAAGAGAACTAGTgtaagatctcttgtttt---gcttctcttgattgtgcagtcacaatttacatgctgttactttcttcattccaagaagattatgatagctaaataacaattgt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207836562|gb|GD805775.1|GD805775
EST:     AGAAAGTATCGTGTTTCTGGGTTGACTTCTCAACCTACCAGAGAACTTGT                         GTTTCCTGTTGATGAGAACTCAACTATGAAATCAGTAGTTGAATACTTCCA
genomic: AGAAAGTATCGTGTTTCTGGGTTGACTTCTCAACCTACCAGAGAACTTGTgtaagttgtt ... gtttctttagGTTTCCTGTTGATGAGAACTCAACTATGAAATCAGTAGTTGAATACTTCCA
EST: gi|207841573|gb|GD809355.1|GD809355
EST:     AGAAAGTATCGTGTTTCTGGGTTGACTTCTCAACCTACCAGAGAACTTGT                         GTTTCCTGTTGAATGAGAACTCAACTA
genomic: AGAAAGTATCGTGTTTCTGGGTTGACTTCTCAACCTACCAGAGAACTTGTgtaagttgtt ... gtttctttagGTTTCCTGTTGA-TGAGAACTCAACTA
EST: gi|24136288|gb|BU926798.1|BU926798
EST:     AGAAAGTATCGTGTTTCTGGGTTGACTTCTCAACCTACCAGAGAACTTGT                         GTTTCCTGTTGATGAGAACTCAACTATGAAATCAGTAGTTGAATACTTCCA
genomic: AGAAAGTATCGTGTTTCTGGGTTGACTTCTCAACCTACCAGAGAACTTGTgtaagttgtt ... gtttctttagGTTTCCTGTTGATGAGAACTCAACTATGAAATCAGTAGTTGAATACTTCCA