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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATGgtatgaccatgaatttttccgtcaatcatttctttttagtatgtgttgatattattgatgtgataatttgctttgaatcccgtcgaagtccatatcagcc...

Basic information

species Glycine max
transcript GLYMA20G25650.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25650.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv01s0011g04180.t01 (Vitis vinifera), 5'ss of exon 6
GGATGATAATTGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATGgtatgaccatgaatttttccgtcaatcatttctttttagtatgtgttgatatta-ttgatgtgataatttgctttgaatcccgtcgaagtccatatcagcc
|    | | ||||||||||||||||||| |||||||||||||| || |||||| ||||||||||| || | || |  |||  |       |  | |||| || |||| |  | | ||  | |||   ||||      ||   | |       | ||||   
GAGCAACAGTTGCTTCATTTTGTTACTTGCAATTCTTTCCACCCCCTTATGACATAGATGgtatgccctttaactgctcctactgattgattatcttagaatttgttaacctcagtttgtatgaacttttgtcaaccatggggccatgactta-atcattt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14258577|gb|BG881485.1|BG881485
EST:     TGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATG                         GTTGGGGACCTCATGCATATTTCCAGATGTTGGCTGAATCTCGTAATGGTG
genomic: TGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATGgtatgaccat ... gaatatgtagGTTGGGGACCTCATGCATATTTCCAGATGTTGGCTGAATCTCGTAATGGTG
EST: gi|151410752|gb|EV280567.1|EV280567
EST:     TGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATG                         GTTGGGGACCTCATGCATATTTCCAGATGTTGGCTGAATCTCGTAATGGTG
genomic: TGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATGgtatgaccat ... gaatatgtagGTTGGGGACCTCATGCATATTTCCAGATGTTGGCTGAATCTCGTAATGGTG
EST: gi|7926175|gb|AW832201.1|AW832201
EST:     TGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATG                         GTTGGGGACCTCATGCATATTTCCAGATGTTGGCTGAATCTCGTAATGGTG
genomic: TGCTTCATTTTGTTACTTACAATTCTTTCCACCTCCATATGACGTAGATGgtatgaccat ... gaatatgtagGTTGGGGACCTCATGCATATTTCCAGATGTTGGCTGAATCTCGTAATGGTG