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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaattcctttgcagtgttctacaattgtatgttgatgtgtgagttttttccccctaatatcttcccaatatttcag

Basic information

species Glycine max
transcript GLYMA20G24070.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 6
CCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgta----ttta---aattcctttgcagtgttctacaattgtatgttgatgtgtgagttttttccccctaat--atcttcccaatatttcag----------------------------------------------
||||||||||| || |||||||| ||||| |||||||| ||||||||||| ||||||||||| ||||| ||||| || ||||| ||| ||||||| |||||||    |||    |||||   |||| || | |  || |  ||  | | |||   ||| |||   |   |   ||  |  | | | ||                                                 
CCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGATCTGGAAAACCCATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagtttttgctcaattcaggtgcactgctatggaaattcatagttaagtgcatgttcttttatcagtacggatggtggctaaacttatatttctcttctgataatattaataatgtcttccgatgtttattccag

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 6
CCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaattcctttgcag------tgttctacaat-tgtatgttgatgtgtgagttttttccccctaatatcttcccaatatttcag----------------------------------------------------------------------
||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||| ||||| || || || |||||||| || ||| ||||||| |||||||  ||| |||   | ||       || ||||||||    ||| ||| |||   ||| |       || ||  ||    |  | |                                                                         
CCTGTCTCACTCGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTACCTGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttcaagcacgctgctctacaatgctcatggtgaagtgcatgttgtggagag-tagtaggttttagaagtattgattgattagcggcattaaatcaatgagtccatctttaaagtttgtaatcatgtactctgattttgttgcag

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 5
CCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaattcct-ttgcagtgttctacaattgtatgttgatgtgtgagt-----tttttccccctaatatcttcccaatatttcag------------------------------------------------------------------
||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||| ||||| || || || || || || || ||| ||||||| |||||||  ||| |||   ||  ||  | || |  |   ||  | |||  | |||      | |    |  | ||  ||    |  | |  |                                                                  
CCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGTTCTGGAAAACCTATTGACAATGGCCCCCCGATATTGCCCGAAGCCTACTTGGATATCTCTGgtaagtaatttctggttctagcatgctgctctacaatactcatggttaagtgcatgctgtcgtgcagagtaggttttagacgtattggttaattgagttaaatcaatgagtccatctttaaattttgtaaatatgtactctgattttgctgcag

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 7
lower sequence: AT4G38510.5 (Arabidopsis thaliana), 5'ss of exon 7
CCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgta-----tttaaattcctttgcagtgttctacaattgtatgttgatgtgtgagttttttccccctaatatcttcccaatatttcag
||||| ||  |||| |||||||| ||||| || |||||||| || || || ||||| || |||||||| || || |||||||| ||| ||||||||||||||       || |    |||  ||      ||| ||   ||  | |          | |    |   |  | |         | |||
CCTGTTTCTTTGGATATGCTTGGTCGCATCTTCAATGGTTCAGGGAAGCCCATTGACAACGGTCCACCTATATTGCCTGAGGCGTACTTGGATATTTCTGgtgagctgctttagcctcttgtcacataattactatctcataataaaacacacagatataattctagacttttgttt----ctccag

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 6
CCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaattcctttgcagtgttctacaattgt--atgttgatgtgtgagtttt----ttccccctaatatctt-cccaatatttcag-----------------
||||||||| |||| |||||||| || || ||||||||||| || ||||| ||||||||||| || || || || || ||||||||| ||||||||||||||   |   ||     |  || || |  ||   |  |   | |  | |||  |||    ||  |   | |  |    ||  || |                     
CCTGTCTCATTGGATATGCTTGGGCGTATCTTTAATGGTTCAGGGAAACCCATTGATAATGGGCCTCCTATATTGCCAGAGGCTTACTTGGATATTTCTGgtgagttttttaggaggtggtattatttaaccattaaaactcacctctgaactttagagtttacaacagtggcagatcctgtactctttttctttccttttttcag

upper sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 5
CCTGTCTCACTGGACATGCTTGGACGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaattcctttgcagtgttctacaatt---gtatgttgatgtgtgagttttttccccctaatatcttcccaatatttcag---------------
|| |||||| |||||||||||||||| || || ||||||||||| ||||| ||||| || || || || ||| |  | || || ||||| || ||||| |||       ||   |||   | | |   ||     | || |||   | |   ||           | || | |  | || |  |                
CCGGTCTCATTGGACATGCTTGGACGTATCTTCAATGGTTCTGGGAAACCCATTGACAACGGCCCTCCCATTCTTGCAGAAGCCTACCTTGACATTTCAGgtgcggtcttttgcttgtcttttccactaacctcagcatcttggaatattttttaaagattgaagagatttgcttattagtcaatttgacatgacctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729967|gb|BU763089.1|BU763089
EST:     ATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGCGAACCTACCCTGAGGAGATGATACAGA
genomic: ATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaat ... aatatttcagGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|209718151|gb|BW677422.1|BW677422
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGNAG-AGATGATACAG
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaat ... aatatttcagGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTG-AGGAGATGATACAG
EST: gi|209701922|gb|BW664576.1|BW664576
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaat ... aatatttcagGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|151411391|gb|EV281202.1|EV281202
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaat ... aatatttcagGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
EST: gi|209713872|gb|BW684065.1|BW684065
EST:     AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTG                         GAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA
genomic: AATTGATAATGGTCCACCAATTTTACCTGAGGCTTACCTGGATATTTCTGgtatttaaat ... aatatttcagGAAGTTCCATCAATCCTAGTGAGAGAACCTATCCTGAGGAGATGATACAGA