Sequence
atgc intronic sequence ATGC exonic sequenceGATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGgtatttgtagttaaacctatttagtatttactatcttatgtttcttcttgtggtagctctaataatatcaattcgggtttgaggacaaggctattcattt...
Basic information
species | Glycine max |
transcript | GLYMA20G23250.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 7
lower sequence: AT3G55400.2 (Arabidopsis thaliana), 5'ss of exon 6
GATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGgtatttgtagttaaacctattta------gtatttactatcttatgtt----tcttcttgtggtag-----ctctaataatatcaattcg-ggtttgaggacaaggctattcattt----------------------------
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GATATTCTACGATTTCACGCTGTCTACTGGCCTGCCATGCTAATGTCTGCTGGTCTTGAACTTCCCAAGATGGTGTTTGGCCATGGGTTTCTGACAAAGgtacatgaccaaaaaactcttgatgctgcatattccctgttcagtgttgagatcttgttcttgccaacttcctttagtcatgttaacatgtgagaggaaaattggatttttcttttctgatatcccatagttatcaaattatag
upper sequence: GLYMA20G23250.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv13s0019g00810.t01 (Vitis vinifera), 5'ss of exon 7
GATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGgtatttgtagttaaacctatttagtatttactatct-tatgtttcttcttgtgg----tagctctaataatatcaattcgggtttgaggacaaggctattcattt
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GATATTTTACGTTTTCATGCAGTTTACTGGCCGGCTATGTTATTGTCAGCCGGATTAAGCCTTCCTAAGATGGTTTTTGGCCATGGATTCTTGACAAAAgtattcg-actcaatatggttatctttgtattgtttatttatttatttttatagaacatgagcattataatattaaatatgctcttcttttaac-ctaaata---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|120531087|gb|EH259220.1|EH259220EST: CTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAG GATGGAATGAAGATGGGCAAGTCACTAGGGAATATACTTGAACCAAACGAT
genomic: CTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGgtatttgtag ... aaaatgttagGATGGAATGAAGATGGGCAAGTCACTAGGGAATATACTTGAACCAAACGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATATTCTACGCTTCCATGCTGTTTACTGGCCAGCTATGCTAATGTCTGCTGGACTAAGCCTTCCTAAAATGGTATTTGGCCATGGATTCTTGACAAAGgtatttgtagttaaacctatttagtatttactatcttatgtttcttcttgtggtagctctaataatatcaattcgggtttgaggacaaggctattcattt
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