1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCAAAGTTGCTGACAGAACGGCTATTGTTACAACAAATGCAGAAACTGTGGTTGTGAGCCCCCCGGGTCTAAAAGAAGCCATAAATGAAGAAACTGgtatctttttttctattccttcttttcaatttgtgcgacatgtttgtttgaattaccaatgtgttttaccaaatttcacattgatgcaacaagtgtctaa...
species | Glycine max |
transcript | GLYMA20G22760.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGTGGTTAAGAGCCCCCCGGGTCTAAAAGAAGCCATAAATGAAGAAACTG CTAAGTACCCCCAAGGTCGGTGCTTTGTGCGACCATCTGGCACTGAAGATGEST: gi|213587536|gb|DB979156.1|DB979156
genomic: TGTGGTTGTGAGCCCCCCGGGTCTAAAAGAAGCCATAAATGAAGAAACTGgtatcttttt ... gcatttacagCTAAGTACCCCCAAGGTCGGTGCTTTGTGCGACCATCTGGCACTGAAGATG
EST: TGTGGTTGTGAGCCCCCCGGGTCTGAAAGAAGCCATAAATGAAGAAACTG CTAAGTACCCCCAAGGTCGGTGCTTTGTGCGACCATCTGGCACTGAAGATGEST: gi|26043787|gb|CA782171.1|CA782171
genomic: TGTGGTTGTGAGCCCCCCGGGTCTAAAAGAAGCCATAAATGAAGAAACTGgtatcttttt ... gcatttacagCTAAGTACCCCCAAGGTCGGTGCTTTGTGCGACCATCTGGCACTGAAGATG
EST: ATAAATGAAGAAACTG CTAAGTACCCCCAAGGTCGGTGCTTTGTGCGACCATCTGGCACTGAAGATGEST: gi|193397862|gb|FK362426.1|FK362426
genomic: ATAAATGAAGAAACTGgtatcttttt ... gcatttacagCTAAGTACCCCCAAGGTCGGTGCTTTGTGCGACCATCTGGCACTGAAGATG
EST: TGTGGTTGTGAGCCCCC-GGGTCTAAAAGAAGCCATAAATGAAGAAACTG CTAAGTACCCCCA
genomic: TGTGGTTGTGAGCCCCCCGGGTCTAAAAGAAGCCATAAATGAAGAAACTGgtatcttttt ... gcatttacagCTAAGTACCCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAAGTTGCTGACAGAACGGCTATTGTTACAACAAATGCAGAAACTGTGGTTGTGAGCCCCCCGGGTCTAAAAGAAGCCATAAATGAAGAAACTGgtatctttttttctattccttcttttcaatttgtgcgacatgtttgtttgaattaccaatgtgttttaccaaatttcacattgatgcaacaagtgtctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA