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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTAATAGAGGTCTTTTATCTTCAGGAATTATGGCTTCTTACGTTGTTTTCCTTTGTTGGAATGCAATCAGAAGgtcaggattctctaacccataaatctctataacggttctttggttaattttagacaccatatcacttttatatattagttctgacttctgagggtctctt...

Basic information

species Glycine max
transcript GLYMA20G19930.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G19930.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G33205.1 (Arabidopsis thaliana), 5'ss of exon 7
---GTTAATAGAGGTCTTTTATCTTCAGGAATTATGGCTTCTTACGTTGTTTTCCTTTGTTGGAATGCAATCAGAAGgtcaggattctctaacccataaatctctataacggttctttggttaattttagacaccatatcacttttatatattagttctgacttctgagggtctctt
      |||||||||||||| ||||| || ||||||||||||||| |||| ||||| ||||||  ||| |||||||||| | ||    | ||  || | ||||     |   || |||| ||| || |  | | |||  |    | |  ||  |||| ||   || |          
GTGAAGAATAGAGGTCTTTTGTCTTCCGGGATTATGGCTTCTTACATTGTCTTCCTATGTTGGTCTGCGATCAGAAGgtaaaga----caaataca-acatct----gatttttgtttgtttagttcttcaaagcattac----taaagtagaagttttg-tatcag----------

upper sequence: GLYMA20G19930.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv05s0051g00380.t01 (Vitis vinifera), 5'ss of exon 7
GTTAATAGAGGTCTTTTATCTTCAGGAATTATGGCTTCTTACGTTGTTTTCCTTTGTTGGAATGCAATCAGAAGgtcaggattctctaacccataaatctctataacggttctttgg-ttaattttagacaccatatcacttttatatattagttctgacttctgagggtctctt-
|| ||||||||||| ||||||||||| || |||||||||||  |||||||||| ||||||  ||| |||||||||| || | |||||  |||| | || ||||   |  |   ||||  | ||||     |  ||  || ||   |    |      |||||   |   | ||   
GTCAATAGAGGTCTCTTATCTTCAGGGATCATGGCTTCTTATATTGTTTTCCTCTGTTGGTCTGCTATCAGAAGgttagaaatctct--cccaaacat-tctaagtcactggcttggactcatttcgagtattatgccatttcacttagctgccaaagactttaaaaattttccag