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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACTgtatgttgaatctctctatttatcttttgtctagtaatgaactttatcttcagtgacattgtggttgtgaatgattgttgctcatttaaatctggcctca...

Basic information

species Glycine max
transcript GLYMA20G16860.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os12g24550.1 (Oryza sativa), 5'ss of exon 8
GCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACTgtatgttgaatctctctatttatcttttgtctagtaatgaactt-tatcttcagtgacattgtggttgtgaatg-attgttgctcatttaaatctggcctca
| || ||  | |||||||||||||| |||||  |||||||||| ||||||||||| | |||||| ||||| ||||| |||||  ||||||| |  |||   | | ||||  |  |||  || | ||    |||||   || |  |     ||||  ||| | ||     | ||    | |    |  
GAACACCTCTATACATGGCTCCAGAACTTGTGAGGGAACAACCTTACAACCACACAGCAGATTTGTGGTCCCTTGGCGTCATCTTgtatgtgggctcttattttgtatcgatgctctgttactaaataagtatctcttgtcat-tgacttttgtacatgtagtgccatactttcttgtttcctttt-

upper sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv16s0039g02400.t01 (Vitis vinifera), 5'ss of exon 7
GCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACTgtatgttgaatctctctattt--atct-------tttgtctagtaatgaactttatcttcagtgacattgtggttgtgaatgattgttgctcatttaaatctggcctca
| ||||| ||||| ||||| |||||||| |||||||| ||||| |||||||||||||  ||||| ||||||||||| || ||  |||||||  |    |   ||||  || |       ||| | |  |||  |||    | |    | |  ||||| |||    ||| | ||  ||| || |||         
GTACTCCTTTGTATATGGCCCCAGAGCTGGTACGGGAGCAACCCTACAACCACACTGCTGATTTGTGGTCTCTTGGAGTTATCTTgtatgtaaatgtcccagatttgaatttggattgatttatttcttaaaaaacagattttcatctcatgttgtgtttgcatttgaatctttttcagttgaat---------

upper sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S53_93V6.1 (Physcomitrella patens), 5'ss of exon 7
GCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACTgtatgttgaatctctctatttatcttttgtctagtaatgaactttatcttcagtgacattgtggttgtgaat--gattgtt-gctcatttaaatctggcctca--
| || ||| ||||||||||||| ||||| || || || ||||| ||||||||||| |  ||| | ||||| ||||||||||| ||||| |||   | | | | |  | |||  ||  | | ||  | ||| |  |     | ||  ||    |   |  |||   | || ||| ||||| |    |    
GGACGCCGCTGTACATGGCTCCTGAGCTAGTTCGAGAGCAACCTTACAACCACACAGCTGATCTTTGGTCCCTTGGTGTCATTCTgtaagtt---tttttgtttgcagcttcagtg-actcattcagtttttggtggccaaaatcttgtccttagtttggatccctagcacatctaaat-tatttttgtc

upper sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ33693 (Selaginella moellendorffii), 5'ss of exon 7
GCACTCCGTTGTACATGGCTCCAGAGCTTGTACGGGAACAACCATACAACCACACTGTAGATTTATGGTCTCTTGGTGTCATACTgtatgttgaatctctctatttatcttttgtctagtaatgaactttatcttcagtgacattgtggttgtgaatgattgttgctcatttaaatctggcctca
| || ||  ||||||||||||| |||||||| || || || || |||||||| || | ||||||||||||||||||||| ||| |||| |||   ||  | ||| |   ||||   |  ||||| || || || | |   |                                            
GAACGCCACTGTACATGGCTCCCGAGCTTGTTCGTGAGCAGCCTTACAACCATACGGCAGATTTATGGTCTCTTGGTGTGATATTgtaagtt--ttccttttatgttcgttttaatt--taatgcacattgtcataaaacag-------------------------------------------