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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAAGGGAATTATGATACTTTTGAGAAGACTCGAGAAGAACAAGTTAAAAACCAGCAAAAAGCATTAGAGGCAAACGAACGTGCTAGATCTCATATGCAGgtattattttcaactgttatagttattcttctttgtgtggatagtttattttgtttcttcctacttaatccttatgcattgtactatattactaagacag...

Basic information

species Glycine max
transcript GLYMA20G16170.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16170.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv02s0025g02160.t01 (Vitis vinifera), 5'ss of exon 8
TAAAGGGAATTATGATACTTTTGAGAAGACTCGAGAAGAACAAGTTAAAAACCAGCAAAAAGCATTAGAGGCAAACGAACGTGCTAGATCTCATATGCAGgtattattttcaactgttatagttattcttctttgtgtggatagtttattttgtttcttcctacttaatcctta--tgcattgtact-atattactaagacag
 || ||| |||||||||| ||||||| ||| ||||| |||||  | || || || || |||||||| ||| |||| |||||  ||||||| ||||||||||| || ||     |   | || |   |  |  |  ||| |    | ||||    || |     | |   ||||   || |||    | || |||||||     
CAAGGGGGATTATGATACATTTGAGAGGACACGAGAGGAACAGCTCAAGAATCAACAGAAAGCATTTGAGTCAAATGAACGGTCTAGATCCCATATGCAGgttttcttcgttgcacct-tactatataatgatgctgtagcatttctattggtgttttagtggcatgtaccttgattggattaagtttatgttactaattt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208145586|gb|GD942707.1|GD942707
EST:     AACGTGCTAGATCTCATATGCAG                         ACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAA
genomic: AACGTGCTAGATCTCATATGCAGgtattatttt ... tttctatcagACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAA
EST: gi|193655966|gb|FK606638.1|FK606638
EST:     CAAAAAGCATTAGAGGCAAACGAACGTGCTAGATCTCATATGCAG                         ACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAA
genomic: CAAAAAGCATTAGAGGCAAACGAACGTGCTAGATCTCATATGCAGgtattatttt ... tttctatcagACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAA