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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACCGGTCACGTCATCACAACAACAATGGTTGGATCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGTAGATAAGgtatatttatgttttcagcatcattcttttcagttgttaattgttccaaggtaggataatggaaaggtttgggttttttaatgggcagttagcaaagtta...

Basic information

species Glycine max
transcript GLYMA20G16030.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G16030.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv18s0041g00100.t01 (Vitis vinifera), 5'ss of exon 7
GTACCGGTCACGTCATCACAACAACAATGGTTGGATCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGTAGATAAGgtatatttatgttttcagcatcattcttttcagttgttaattgttccaaggtaggataatggaaaggtttgggttttttaatgggcagttagcaaag--tta
      ||  | ||||||   ||  | ||||||||||| || ||  | |||||||||||| |||||||||| |||||||||||||||| |   | |  | ||         || | |||||||    |    | | |   |  |    |        ||     | ||    | |  |||
------GTATCTTCATCAACTCATGAGTGGTTGGATCCGTCATTTCAGTTGAATGTTCCTCTAGTTGATGTTGATAAGgtatatttat-tcccctgt-tgatgaaaagtgattctcaattgtttagggacgtgtttacttatcgaaaagaaaaaaagaaaaaaaaattgtttagggctta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308098770|gb|HO760511.1|HO760511
EST:     GGTTGGATCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGTAGATAAG                         GTGCGATGTATAATAAGGAACATAGTTAGGGACTGGGCAGCTGAG
genomic: GGTTGGATCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGTAGATAAGgtatatttat ... tttacctcagGTGCGATGTATAATAAGGAACATAGTTAGGGACTGGGCAGCTGAG
EST: gi|7146905|gb|AW508827.1|AW508827
EST:     GGTTGGATCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGTAGATAAG                         GTGCGATGTATAATAAGGAACATAGTTAGGGACTGGGCAGCTGAG
genomic: GGTTGGATCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGTAGATAAGgtatatttat ... tttacctcagGTGCGATGTATAATAAGGAACATAGTTAGGGACTGGGCAGCTGAG
EST: gi|9204212|gb|BE330436.1|BE330436
EST:     GGTTGGATCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGTAGATAAG                         GTGCGATGTATAATAAGGAACATAGTTAGGGACTGGGCAGCTGAG
genomic: GGTTGGATCCATCTTTAAAATTGAATGTTCCTTTAGTTGATGTAGATAAGgtatatttat ... tttacctcagGTGCGATGTATAATAAGGAACATAGTTAGGGACTGGGCAGCTGAG