Sequence
atgc intronic sequence ATGC exonic sequenceATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAGgtatgtcatatgtcccattaaccgaaaaacagtgcagtgagcttccaaccactacttattcatagatattgcattgaattatggtaatggtcattaatta...
Basic information
species | Glycine max |
transcript | GLYMA20G07280.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G07280.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os05g25310.2 (Oryza sativa), 5'ss of exon 8
ATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAGgtatgtcatatgtcccattaaccgaaaaacagtgcag-tgagcttccaaccactacttattcatagatattgcattgaattatggtaatggtcattaatta------
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CTATGGATTGACAGAGACTTGTGCTGGAGCAGCCTTTTCTGAATGGGATGACACAAGTGTGGGCCGTGTTGGTCCACCCCTTCCTTGTTGCTATGTCAAGgtctgt-----gccttactagg-gagagtcagcttatctgatttatttgcttatacttact-agggacagtcaacttatctgatgtatatgcatataattaacagat
upper sequence: GLYMA20G07280.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM5G840955_T01 (Zea mays), 5'ss of exon 2
ATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAGgtatgt---catatgtcccattaaccgaaaaacagtgcagtgagcttccaaccactacttat-tcatagatattgcat-tgaa--ttatggtaatggtcattaatta
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CTATGGATTGACTGAAACTTGTGCTGGAGCAGCTTTCACTGAATGGGATGATACAAGTGTGGGTCGTGTTGGTCCACCACTTCCTTGTTGCTATGTGAAGgtttgtgttcacgaatttgatgtttgctggatctgt-taacaaatat--atttgatattcatgtggcagatgtagcagatgaaacctgcattaaaaggaatga----
upper sequence: GLYMA20G07280.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G079236_T01 (Zea mays), 5'ss of exon 9
ATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAGgtatgtcatatgt-cccattaaccgaaaaacagtgcagtgagcttccaaccactacttat-tcatagatattgcattgaattatggtaatggtcattaatta
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CTATGGTTTGACTGAAACCTGTGCTGGAGCAGCTTTCACTGAATGGGATGACACAAGTGTGGGTCGTGTTGGTCCACCACTTCCTTGCTGCTATGTGAAGgtttgttctacaaatttgatgtttgctggatccgttaacaaatgt--agttgatattcatatggcagatgtagcagataatacctgcattaaaaagaacaggMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|192326437|gb|FK017709.1|FK017709EST: ACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAG CTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA
genomic: ACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAGgtatgtcata ... ggttgtatagCTTGTTTCTTGGGAAGAAGGAGGGTATCTGACATCAGATAAACCAATGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATGGCTTGACTGAAACATTTGCTGGGGCTGCCTTCTCAGAGTGGGATGACTACAGTGTGGGACGTGTTGGTCCACCTCTTCCTTGTTGCTACATTAAGgtatgtcatatgtcccattaaccgaaaaacagtgcagtgagcttccaaccactacttattcatagatattgcattgaattatggtaatggtcattaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaaca