Sequence
atgc intronic sequence ATGC exonic sequenceTAAAAAAGAAGGTGAAGAACAAAATGATGAGGATCAATTATTAGAGGAAGTGACTTTTGATCGATGCTTTTACATTTATGGAGGTCCAGAACAATTGGAGgtattcttatcgtcaaaagatatagaaaaattctcaaaatatcatttctgtatgttatagaatatcttagagtatcttaaatgattttcttaaaccaaca...
Basic information
species | Glycine max |
transcript | GLYMA20G01190.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G01190.1 (Glycine max), 5'ss of exon 7
lower sequence: AT2G15860.2 (Arabidopsis thaliana), 5'ss of exon 6
TAAAAAAGAAGGTGAAGAACAAAATGATGAGGATCAATTATTAGAGGAAGTGACTTTTGATCGATGCTTTTACATTTATGGAGGTCCAGAACAATTGGAGgta---ttcttatcgtcaaaagata----tagaaaaattctcaaaatatcatttctgtatgttatagaatatcttagagtatcttaaatgattttcttaaaccaaca
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TGGAGCTGAGAAGGATAGGGTAGACTTTAAGGATCAAGTACTTGAGGAGGTTACATTTGATCGATGCTTTTACATTTATGGTGGTCCTGAGCAGCTTGAGgtgacctacttatctctgaaaaccacctgtctattcattcttggataatcgattttgtct-tccctcaatttttcaatgcat-------ggtactttcag-------
upper sequence: GLYMA20G01190.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv03s0063g01360.t01 (Vitis vinifera), 5'ss of exon 5
TAAAAAAGAAGGTGAAGAACAAAATGATGAGGATCAATTATTAGAGGAAGTGACTTTTGATCGATGCTTTTACATTTATGGAGGTCCAGAACAATTGGAGgtattcttatcgtcaaaagatatagaaaaattctcaaaatatcatttctgtatg--ttatagaatatcttagagtatcttaa-atgattttcttaaaccaaca
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TCCTAATGAAGTGGAAGAAAAAGCTGGAGAGGATCAATTATTTGAGGAAGTGACATTTGATCGATGCTTCTACATATACGGGGGACCAGAGCAATTGGAGgttacttctttatgtttggaacttg---atttctttaagtgt-gttagtgattgaatgattgttttactaaaagtgctgaactatgatggttctcag------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208256475|gb|GE051802.1|GE051802EST: GATCGATGCTTTTACATTTATGGAGGTCCAGAACAATTGGAG GAACTGGAGGCTTTGTCTAGTCATTATGCATTGTTATTTAACCGAAGAAAA
genomic: GATCGATGCTTTTACATTTATGGAGGTCCAGAACAATTGGAGgtattcttat ... caatactcagGAACTGGAGGCTTTGTCTAGTCATTATGCCTTGTTATTTAACCGAAGAAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAAAAAGAAGGTGAAGAACAAAATGATGAGGATCAATTATTAGAGGAAGTGACTTTTGATCGATGCTTTTACATTTATGGAGGTCCAGAACAATTGGAGgtattcttatcgtcaaaagatatagaaaaattctcaaaatatcatttctgtatgttatagaatatcttagagtatcttaaatgattttcttaaaccaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagata