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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgagaatggctaagatgcactttttttttaaattttttttcccgttatttccatgacatgatttcatcgaactaaaattttatgtcctctag

Basic information

species Glycine max
transcript GLYMA19G45140.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os02g54340.2 (Oryza sativa), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtg-----agaatggctaagatgcac-----ttt-----ttttttaaattttttttcccgttatttccatgacatgatttcatcgaactaaaattttatgtcctctag
||| ||| | || ||||||||||||||  | || ||||| |||||| ||||||| |||||||||||||| || || || ||||| || ||| ||||||||||      |  || |  || |  |||      ||     |||| |  | ||    | |   | |||      |||| ||      ||  |||  || |  |  | |||
GGCCAATCGTACAGATGCTTGTTTTATCCGTGTAATTGGCAGTGAGTTAGTTCAAAAATATGTTGGTGAAGGGGCACGGATGGTCCGGGAATTATTTCAGgtatgtgcaacattgtgaaaactcacaagaacttatcaattttctgcacttaaagtgcttctgtttgacaagcatgtttctgaaaaaaaaaatgttgacttggtttag

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G110185_T01 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgagaatggctaagatgcactttttttttaaattttttttcccgttatttccatg-acatgatttcatcgaactaaaattttatgtcctctag---
 || ||  |||||||||||||||| ||  | || ||||||||||||||||||||||| |||||||| || |||||||| |||||  | ||||| || |||||    ||  ||| |  ||  |   |   ||||   ||  ||| ||| ||| | || |||    || ||    || |||    || | || | |   
AGCAAACCGGACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGCTAGTTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGgt----atatctagg--gctgtgaatccgtaaaaggttcatccagtttttttcctgcacacatgttaatatttctgaaacaaaatattctattgtag

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G110185_T03 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgagaatggctaagatgcactttttttttaaattttttttcccgttatttccatg-acatgatttcatcgaactaaaattttatgtcctctag---
          |||||||||||||| ||  | || ||||||||||||||||||||||| |||||||| || |||||||| |||||  | ||||| || |||||    ||  ||| |  ||  |   |   ||||   ||  ||| ||| ||| | || |||    || ||    || |||    || | || | |   
----------ACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGCTAGTTCAGAAGTATGTTGGAGAAGGTGCTCGGATGGTCAGGGAACTGTTCCAGGT----ATATCTAGg--gctgtgaatccgtaaaaggttcatccagtttttttcctgcacacatgttaatatttctgaaacaaaatattctattgtag

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G181359_T01 (Zea mays), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgagaatggctaagatgcactttttttttaaattttttttcccgttatttccatg-acatgatttcatcgaa---ctaaaattttatgtcctctag---
 || ||| |||||||||||||||| ||  | || |||||||||||| |||||||||| ||||| || || |||||||| |||||  | ||||| || |||||    ||       |||  || |   | |  |  | || ||||  | ||| |||| || ||  |||| |  |   || ||||    | | || | |   
AGCAAATCGGACTGATGCTTGTTTCATCCGTGTAATTGGAAGTGAGTTAGTTCAGAAGTATGTCGGCGAAGGTGCTCGGATGGTCAGGGAACTTTTCCAGgtatatat-------atg-gctgtgaatctgtaaatattatcccagtcttttcatgtacgtgtgttcaacatatttctgaaatgaattcttctatggtag

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgagaa--tggctaagatgcactttttttttaaattttttttcccgttatttccatgacatgatttcatcgaactaaaattttatgtc-ctctag
|||||| || |||||||| ||||||||  | |||||||||||||| || ||||||||||| ||||| ||||| ||| | ||||||||||||||||||||||| | ||  || |  |  |  ||  ||| | |  |||| ||||   |||  ||          || |  ||  |||   |  || | |  ||  ||
GGCTAACAGAACTGATGCATGTTTTATTCGTGTTATTGGAAGTGAACTTGTTCAGAAATACGTTGGCGAGGGGGCTAGGATGGTTCGTGAACTATTTCAGgtcacaagctgccacatgtttacagtttgtcttcatttattttattgtt-cttgatcattgctatattgtccgactgctacctttttttgctgcag

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S49_256V6.1 (Physcomitrella patens), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgag--aatggctaagatgcactttttttttaaattttttttcccgttatttccatgac-atgatttcatcga--actaaaattttatgtcctctag--
 || |||||||| |||||||| || ||  | |||||||| |||||||| |||||||||||||| || ||||||||||| ||||| ||||| || || ||||  ||  ||| | |||      |   |   | |  |||  | |    |   ||    ||| ||  |||  ||     |    |   | | | |||     
TGCCAATAGGACAGATGCTTGCTTCATTCGTGTTATTGGCAGTGAGCTTGTTCAGAAATATGTAGGAGAGGGTGCTCGGATGGTCCGTGAGCTTTTCCAGgcaagtcaatcgttaatcacttcacatccctgaggtttgatatggtttggatttagagactatcctttagtcattcgcctggaacctgtatactcacatc

upper sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 7
lower sequence: PP1S152_13V6.2 (Physcomitrella patens), 5'ss of exon 7
GGCTAATAGGACTGATGCTTGTTTTATAAGAGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgagaatggctaagatg-cactttttttttaaattttttttcccgttatttccatgacatgatttcatcgaact------aaaattttatgtcctctag-
 || |||||||| ||||| || || ||  | |||||||| |||||||| |||||||||||||| || ||||| ||||| ||||||||||| || |||||||| |||        |||  | |    | ||| |  |||       |||      |  | | |||| ||    | |       |||   || | |       
TGCAAATAGGACAGATGCATGCTTCATTCGTGTTATTGGCAGTGAGCTTGTTCAGAAATATGTAGGAGAGGGAGCTCGCATGGTTCGTGAGCTTTTTCAGgtaagatacatggtgatctctccgcatctttcagatttaagatgggttggcgtta-aagaggattccaagagaatttgccagaaaagctacgccaagcgta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208281430|gb|GE078506.1|GE078506
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgagaatgg ... tgtcctctagATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
EST: gi|18040702|gb|BM308996.1|BM308996
EST:     TTCAGAAATATGTTGGTGAAGGTGCTCGAATGGTTCGTGAAATATTTCAG                         AAGGGCCCGTTCAAA-AAGGCATGCATTGTGTTTTTCAAAGAAAGT-GATG
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgagaatgg ... tgtcctctagATGG-CCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAA-GTTGATG
EST: gi|192295887|gb|FG992653.1|FG992653
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgagaatgg ... tgtcctctagATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
EST: gi|254320309|gb|GR831117.1|GR831117
EST:     TGAACTATTTCAG                         AT-GCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
genomic: TGAACTATTTCAGgtgagaatgg ... tgtcctctagATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
EST: gi|254337400|gb|GR849353.1|GR849353
EST:     TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
genomic: TTCAGAAATATGTTGGTGAGGGTGCTCGAATGGTTCGTGAACTATTTCAGgtgagaatgg ... tgtcctctagATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
EST: gi|254337401|gb|GR849354.1|GR849354
EST:     TCGAATGGTTCGTGAACTATTTCAG                         ATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA
genomic: TCGAATGGTTCGTGAACTATTTCAGgtgagaatgg ... tgtcctctagATGGCCCGTTCAAAGAAGGCATGCATTGTGTTTTTCGATGAAGTTGATGCA