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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATGTGATCAAGTCAGACACCTTTATTATAGGATTAGATCAAATGGACCACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCATCAGgttggttttctattctgtgttctagttgaggatttggatcctgccatgcaatgacctcagatgatggaatcatttgatgaaagacaagcacactgcccta...

Basic information

species Glycine max
transcript GLYMA19G43630.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58015124|gb|CX701866.1|CX701866
EST:     CACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCATCAG                         CAGCTCTTAAATGGTGCTCAGAACAAGGCTCCTGCATATTTGGGTGGCATT
genomic: CACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCATCAGgttggttttc ... tggtgtctagCAGCTCTTAAATGGTGCTCAGAACAAGGCTCCTGCATATTTGGGTGGCATT
EST: gi|58017534|gb|CX704276.1|CX704276
EST:     CACTTGCATATAATAGTATTTCGACATCAACAGCCAATTCAGTCCATCAG                         CAGCTCTTAAATGGTGCTCAGAACAAGGCTCGTGCATATTTGGGTGGCATT
genomic: CACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCATCAGgttggttttc ... tggtgtctagCAGCTCTTAAATGGTGCTCAGAACAAGGCTCCTGCATATTTGGGTGGCATT
EST: gi|58021467|gb|CX708208.1|CX708208
EST:     CACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCATCAG                         CAGCTCTTAAATGGTGCTCAGAACAAGGCTCCTGCATATTTGGGTGGCATT
genomic: CACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCATCAGgttggttttc ... tggtgtctagCAGCTCTTAAATGGTGCTCAGAACAAGGCTCCTGCATATTTGGGTGGCATT
EST: gi|254340000|gb|GR858125.1|GR858125
EST:     CACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCAT---                         CAGCTCTTAAATGGTGCTCAGAACAAGGCTCCTGCATATTTGGGTGGCATT
genomic: CACTTGCATATAATAGTATTTCGACATCAACAACCAATTCAGTCCATCAGgttggttttc ... tggtgtctagCAGCTCTTAAATGGTGCTCAGAACAAGGCTCCTGCATATTTGGGTGGCATT