Sequence
atgc intronic sequence ATGC exonic sequenceGCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTTgtaaggacattaaccatctactctatagacatattttacttacaatgtgctgctctatttttaatattctttgacatgattaaaaaactggatgtttctt...
Basic information
species | Glycine max |
transcript | GLYMA19G42340.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os08g32600.1 (Oryza sativa), 5'ss of exon 7
GCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTTgtaaggacattaaccatctactctatagacatattttacttacaatgtgctgctctatttttaatattctttgacatgattaaaaaactggatgtttctt----
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GCGACCACT------GCCAAGACAATGAAAGGGACACCATATTGGATGGCCCCAGAAGTAATTGTTGGGAGTGGGCATGACTTgtaagtggacaagctctttatctcatcattatagttaact----gctcgttgctcgatccttagtgatgcttgtggtcctctgactctcttatttctttaagaa
upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G064613_T03 (Zea mays), 5'ss of exon 7
GCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTTgtaaggacattaaccatct---actctatagacatattttac-ttacaatgtgctgctctatttttaatattctttgacatgattaaaaaactggatgtttctt
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GCAACTGCAACTGCTGCCAAGACGATGAAAGGTACCCCATATTGGATGGCACCAGAAGTCATTGTTGGAAGCGGTCACAATTGgtaagctcatgaatctcttttgtcttcatcaatgtgtattagattagaaaaagcaagttttcacct--catctgtgggtatgttgtaagaattaagaataac--
upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G54960.1 (Arabidopsis thaliana), 5'ss of exon 7
GCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTTgtaaggacattaaccatctactctatagacatattttacttacaatgtgctgctctatttttaatatt-ctttgacatgattaaaaaactggatgtttctt
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GCTACTATTTCGGGTGCCAAATCTATGAAAGGAACTCCCTATTGGATGGCTCCAGAAGTTATTCTTCAAACCGGGCATAGCTTgtaag--catta--cttcaaacatgtttgtaattgctaggttacatgctttgtcgccaatctaatattaccttggttattctatgcag-------------
upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 7
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 5'ss of exon 7
GCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTTgtaaggacattaaccatctactc---tatagacatattttacttacaatgtgctgctc-tatttttaatattctttgacatgattaaaaaactggatgtttctt---------------------------------------
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GCTACGATGACTGGTGCAAAATCTATGAAAGGGACACCATATTGGATGGCTCCGGAAGTTATTCTTCAAACTGGACATAGCTTgtaagaa-accaagcgtgctcgtaaatgcaaaattagatgttttgtaac-tgatactcatacaattgtggctattaattgtagtcctggtgacttatgtcccatatttttgatttctcacaaacctgtggctattgttctcag
upper sequence: GLYMA19G42340.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0128g00430.t01 (Vitis vinifera), 5'ss of exon 7
GCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTTgtaaggacattaaccatctactctatagacatatttt-acttacaatgtgctgc-tctatttttaatattctttgacatgattaaaaaactggatgtttctt-
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GCTACCATTTCAGGTGCCAAGTCCATGAAAGGCACCCCGTATTGGATGGCTCCGGAAGTCATTCTCCAGACAGGCCATAGCTTgtaaggactatatcaaac--ctctaaaattatgtttttatttttattttattttatttatttatagt-taagatgatatatccaaaattgttgaacttggctaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208162310|gb|GD962201.1|GD962201EST: GATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTT CTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGG
genomic: GATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTTgtaaggacat ... gccttttcagCTCTGCTGACATATGGAGTGTGGGTTGTACTGTGATTGAGATGGCCACTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAACCATTTCTGGTGCCAAGTCCATGAAAGGTACTCCATATTGGATGGCTCCAGAAGTTATTCTCCAGACTGGGCATTGCTTgtaaggacattaaccatctactctatagacatattttacttacaatgtgctgctctatttttaatattctttgacatgattaaaaaactggatgtttctt
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT