Sequence
atgc intronic sequence ATGC exonic sequenceGCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACCGTTGGAAATATTGTTACTGGAGATGATTTGCAGACAGAGgtattaagttcacgagtttctcagggcttgttttttagattcttaatatacaggttactatatgtctctagctaatctgtgttaacggatatcgtaatag...
Basic information
species | Glycine max |
transcript | GLYMA19G41770.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 7
lower sequence: LOC_Os01g14950.1 (Oryza sativa), 5'ss of exon 7
GCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACCGTTGGAAATATTGTTACTGGAGATGATTTGCAGACAGAGgtattaagttcacgagtttctcagggcttgttttttagattcttaatatacaggttactatatgtctctag--ctaatctgtgttaacggatatcgtaatag---
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CCATCCATCACCTTCAGTGCTTATACCCGCACTACGAACTGTTGGAAATATTGTAACTGGAGATGACGCGCAAACTCAGgtattgtgtt---gattttttgcatctctatatctgacagattt--tgtatcaattgatatcaactactaagactcatgaatcttgagcttaatatttagaggtt
upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 7
lower sequence: GRMZM2G088231_T01 (Zea mays), 5'ss of exon 7
GCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACCGTTGGAAATATTGTTACTGGAGATGATTTGCAGACAGAGgtattaagttcacgagtttctcagggcttgttttttagattcttaatatacaggttactatatgtctctagctaatctgtgttaacg-gatatcgtaatag----
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CCATCCATCACCATCGGTGCTTATACCTGCTCTACGAACTGTTGGGAATATTGTCACTGGAGATGATTTGCAAACTCAGgtg---ggatttcaagtttggt--ggctttcttctatgtccggcaaactttatgcaattagttatcagagctaaatttgtgtggatatgattatttattatgggt
upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 7
lower sequence: Vv14s0060g01510.t01 (Vitis vinifera), 5'ss of exon 7
GCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACCGTTGGAAATATTGTTACTGGAGATGATTTGCAGACAGAGgtattaagttcacgagtttctcagggcttgttttttagattcttaatatacaggttactatatgtctctagctaatctgtgttaacggatatcgtaatag---
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TCACCCATCTCCTTCTGTTCTCATTCCTGCACTTCGCACGGTTGGAAACATTGTCACTGGAGATGATATGCAAACCCAGgtatt--gcccacttaaaaaacatctgtaaatattttggtctcctgcatgtaa-tccttttattcttaaaaatataaaaggtcaactaagttactaacagcta
upper sequence: GLYMA19G41770.1 (Glycine max), 5'ss of exon 7
lower sequence: EFJ38593 (Selaginella moellendorffii), 5'ss of exon 7
GCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACCGTTGGAAATATTGTTACTGGAGATGATTTGCAGACAGAGgtattaagttcacgagtttctcagggcttgttttttagattcttaatatacaggttactatatgtctctagctaatctgtgttaacggatatcgtaatag
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GTATCCTTCACCGAATGTTCTTATTCCTGCTCTTCGTACGGTGGGAAACATTGTGACTGGTGACGATGTCCAAACGCAGgta--aacttgaaacggaacatcctagatgtttctta--cgcttgcctttaaatttatttcag-------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7588820|gb|AW704607.1|AW704607EST: CTCTTCGTACCGTTGGAAATATTGTTACTGGAGATGATTTGCAGACAGAG GTTATCATCAACCATCAAGCTCTTTCACGTCTTCTGAATCTCTTGACTAAT
genomic: CTCTTCGTACCGTTGGAAATATTGTTACTGGAGATGATTTGCAGACAGAGgtattaagtt ... tcttgcttagGTTATCATCAACCATCAAGCTCTTTCACGTCTTCTGAATCTCTTGACTAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACCCTTCCCCTTCAGTGCTTATTCCTGCTCTTCGTACCGTTGGAAATATTGTTACTGGAGATGATTTGCAGACAGAGgtattaagttcacgagtttctcagggcttgttttttagattcttaatatacaggttactatatgtctctagctaatctgtgttaacggatatcgtaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG